Problem: Aligning stack changes pixelintensities

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Problem: Aligning stack changes pixelintensities

TomEHG
Hi!

I have a problem using the highly recomendable 'MultiStackReg' plugin  
(by Brad Busse). It seems that the alignment procedure somehow changes  
the intensities of pixels. In general the newly generated, aligned  
stack appears to be brighter.
The changes are very small and probably negligible. But i would like  
to understand what's going on and why this happens. Unfortuantely i  
have no idea about Java programming. But maybe somebody has experience  
with this plugin or has any other idea what's going on.

Any help or comment is appreciated!

Regards,

Thomas

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