Problem with Fit function in macro language with Fiji/ImageJ 1.48d but not Fiji/ImageJ 1.47v

[Gelman, Laurent]

Hi everybody,

I have a macro in Fiji that was running fine until I made the latest upgrade of Fiji which installs ImageJ 1.48d. I have the error message copied below when using the Fit function. Downgrading ImageJ in Fiji to from 1.48d to 1.47v solves the problem...

Thanks for your help and best regards,

Laurent.

Started Rieka_FRAP_V9_.ijm at Thu Oct 10 12:49:31 CEST 2013
java.lang.NullPointerException: null
            at ij.measure.CurveFitter.settingsDialog(CurveFitter.java:1182)
            at ij.measure.CurveFitter.doFit(CurveFitter.java:175)
            at ij.measure.CurveFitter.doCustomFit(CurveFitter.java:243)
            at ij.macro.Functions.fitCurve(Functions.java:4754)
            at ij.macro.Functions.fit(Functions.java:4684)
            at ij.macro.Functions.getFunctionValue(Functions.java:229)
            at ij.macro.Interpreter.getFactor(Interpreter.java:1363)
            at ij.macro.Interpreter.getTerm(Interpreter.java:1334)
            at ij.macro.Interpreter.getStringExpression(Interpreter.java:1474)
            at ij.macro.Interpreter.getStringTerm(Interpreter.java:1293)
            at ij.macro.Interpreter.getString(Interpreter.java:1250)
            at ij.macro.Interpreter.doStatement(Interpreter.java:276)
            at ij.macro.Interpreter.doBlock(Interpreter.java:586)
            at ij.macro.Interpreter.doStatement(Interpreter.java:267)
            at ij.macro.Interpreter.doIf(Interpreter.java:957)
            at ij.macro.Interpreter.doStatement(Interpreter.java:243)
            at ij.macro.Interpreter.doStatements(Interpreter.java:213)
            at ij.macro.Interpreter.run(Interpreter.java:110)
            at ij.macro.Interpreter.run(Interpreter.java:80)
            at CLI.Refresh_Macros.runScript(Refresh_Macros.java:56)
            at common.RefreshScripts.runScript(RefreshScripts.java:328)
            at fiji.scripting.TextEditor$Tab$6.execute(TextEditor.java:1216)
            at fiji.scripting.TextEditor$Executer$1.run(TextEditor.java:1776)

_____________________________________________
Laurent Gelman, PhD
Head of Facility for Advanced Imaging and Microscopy
(Light Microscopy)

Friedrich Miescher Institut
WRO 1066.2.16
Maulbeerstrasse 66
CH-4058 Basel
[phone]
[phone]


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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Michael Schmid]

Hi Laurent,

sorry, I fear that this bug was my fault, but I think it should be fixed in the current daily build (Help>Update ImageJ).
If this is not the case, please sent the part of the macro code that calls the curve fitting to me.

Michael
________________________________________________________________
On Oct 10, 2013, at 12:55, Gelman, Laurent wrote:

> Hi everybody,
>
> I have a macro in Fiji that was running fine until I made the latest upgrade of Fiji which installs ImageJ 1.48d. I have the error message copied below when using the Fit function. Downgrading ImageJ in Fiji to from 1.48d to 1.47v solves the problem...
>
> Thanks for your help and best regards,
>
> Laurent.
>
> Started Rieka_FRAP_V9_.ijm at Thu Oct 10 12:49:31 CEST 2013
> java.lang.NullPointerException: null
>            at ij.measure.CurveFitter.settingsDialog(CurveFitter.java:1182)
>            at ij.measure.CurveFitter.doFit(CurveFitter.java:175)
>            at ij.measure.CurveFitter.doCustomFit(CurveFitter.java:243)
>            at ij.macro.Functions.fitCurve(Functions.java:4754)
>            at ij.macro.Functions.fit(Functions.java:4684)
>            at ij.macro.Functions.getFunctionValue(Functions.java:229)
>            at ij.macro.Interpreter.getFactor(Interpreter.java:1363)
>            at ij.macro.Interpreter.getTerm(Interpreter.java:1334)
>            at ij.macro.Interpreter.getStringExpression(Interpreter.java:1474)
>            at ij.macro.Interpreter.getStringTerm(Interpreter.java:1293)
>            at ij.macro.Interpreter.getString(Interpreter.java:1250)
>            at ij.macro.Interpreter.doStatement(Interpreter.java:276)
>            at ij.macro.Interpreter.doBlock(Interpreter.java:586)
>            at ij.macro.Interpreter.doStatement(Interpreter.java:267)
>            at ij.macro.Interpreter.doIf(Interpreter.java:957)
>            at ij.macro.Interpreter.doStatement(Interpreter.java:243)
>            at ij.macro.Interpreter.doStatements(Interpreter.java:213)
>            at ij.macro.Interpreter.run(Interpreter.java:110)
>            at ij.macro.Interpreter.run(Interpreter.java:80)
>            at CLI.Refresh_Macros.runScript(Refresh_Macros.java:56)
>            at common.RefreshScripts.runScript(RefreshScripts.java:328)
>            at fiji.scripting.TextEditor$Tab$6.execute(TextEditor.java:1216)
>            at fiji.scripting.TextEditor$Executer$1.run(TextEditor.java:1776)
>
> _____________________________________________
> Laurent Gelman, PhD
> Head of Facility for Advanced Imaging and Microscopy
> (Light Microscopy)
>
> Friedrich Miescher Institut
> WRO 1066.2.16
> Maulbeerstrasse 66
> CH-4058 Basel
> [phone]
> [phone]
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html