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Problems with ImageJ program

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Valeria Ianneci

Problems with ImageJ program

Good afternoon,

my name is Valeria and I am a student from Italy.

I am having some troubles using ImageJ lately. Everytime I try to upload a
dataset of images the program stops working and my entire computer is
impaired.

On my laptop I have installed Windows 10 Pro. May this be the problem? Is
there a specific version of ImageJ that I have to use?

I really do not know how to fix this problem, so please let me know if you
do.

My best regards,
Valeria

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Herbie

Re: Problems with ImageJ program

Greetings,

please tell us exactly what you are doing and what fails.

What version of ImageJ are you using?

What kind of images do you want to open in ImageJ?

Can you provide a small image that does not open in ImageJ or makes it
crash?

We need more information to help you.

Regards

Herbie

:::::::::::::::::::::::::::::::::::::::::::::
Am 31.03.21 um 15:32 schrieb Valeria Ianneci:

> Good afternoon,
>
> my name is Valeria and I am a student from Italy.
>
> I am having some troubles using ImageJ lately. Everytime I try to upload a
> dataset of images the program stops working and my entire computer is
> impaired.
>
> On my laptop I have installed Windows 10 Pro. May this be the problem? Is
> there a specific version of ImageJ that I have to use?
>
> I really do not know how to fix this problem, so please let me know if you
> do.
>
> My best regards,
> Valeria
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

CARL Philippe (LBP)

Re: Problems with ImageJ program

In reply to this post by Valeria Ianneci

Dear Valeria,
I'm afraid you need to be slightly more precise on your description.
By "trying to upload a dataset of images" I guess you want to open a stack of pictures, right?
What is the size of this stack?
With Edit>Options>Memory_&_Threads... you can try to to increased the reserved memory for ImageJ.
Also (Windows feature) with Ctrl+Shift+Esc you can look at the Performances of your machine and the Processes taking a lot of memory or ressources.
My best regards,
Philippe

Philippe CARL
Laboratoire de Bioimagerie et Pathologies
UMR 7021 CNRS - Université de Strasbourg
Faculté de Pharmacie
74 route du Rhin
67401 ILLKIRCH
Tel : +33(0)3 68 85 42 89

----- Mail original -----
De: "Valeria Ianneci" <[hidden email]>
À: "imagej" <[hidden email]>
Envoyé: Mercredi 31 Mars 2021 15:32:34
Objet: Problems with ImageJ program

Good afternoon,

my name is Valeria and I am a student from Italy.

I am having some troubles using ImageJ lately. Everytime I try to upload a
dataset of images the program stops working and my entire computer is
impaired.

On my laptop I have installed Windows 10 Pro. May this be the problem? Is
there a specific version of ImageJ that I have to use?

I really do not know how to fix this problem, so please let me know if you
do.

My best regards,
Valeria

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Valeria Ianneci

Re: Problems with ImageJ program

Yes I’m trying to open a stack of pictures. They are in the TIF format.

The stack is pretty big, there are about 1500 pictures. But the program has
worked in the past with stacks of similar size.

I have already tried to increase the memory but the problem wasn’t solved.

Basically it uploads the stack up until a certain point and then the
program literally stops working. I have to close it and try to lunch the
program again.

Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
[hidden email]> ha scritto:

> Dear Valeria,
> I'm afraid you need to be slightly more precise on your description.
> By "trying to upload a dataset of images" I guess you want to open a stack
> of pictures, right?
> What is the size of this stack?
> With Edit>Options>Memory_&_Threads... you can try to to increased the
> reserved memory for ImageJ.
> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
> Performances of your machine and the Processes taking a lot of memory or
> ressources.
> My best regards,
> Philippe
>
> Philippe CARL
> Laboratoire de Bioimagerie et Pathologies
> UMR 7021 CNRS - Université de Strasbourg
> Faculté de Pharmacie
> 74 route du Rhin
> <https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&source=g>
> 67401 ILLKIRCH
> Tel : +33(0)3 68 85 42 89
>
> ----- Mail original -----
> De: "Valeria Ianneci" <[hidden email]>
> À: "imagej" <[hidden email]>
> Envoyé: Mercredi 31 Mars 2021 15:32:34
> Objet: Problems with ImageJ program
>
> Good afternoon,
>
> my name is Valeria and I am a student from Italy.
>
> I am having some troubles using ImageJ lately. Everytime I try to upload a
> dataset of images the program stops working and my entire computer is
> impaired.
>
> On my laptop I have installed Windows 10 Pro. May this be the problem? Is
> there a specific version of ImageJ that I have to use?
>
> I really do not know how to fix this problem, so please let me know if you
> do.
>
> My best regards,
> Valeria
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Herbie

Re: Problems with ImageJ program

Did you try opening your stacks as virtual stacks?
This should work independent of the stack size.

Regards

Herbie

:::::::::::::::::::::::::::::::::::::::::::::
Am 31.03.21 um 16:09 schrieb Valeria Ianneci:

> Yes I’m trying to open a stack of pictures. They are in the TIF format.
>
> The stack is pretty big, there are about 1500 pictures. But the program has
> worked in the past with stacks of similar size.
>
> I have already tried to increase the memory but the problem wasn’t solved.
>
> Basically it uploads the stack up until a certain point and then the
> program literally stops working. I have to close it and try to lunch the
> program again.
>
> Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
> [hidden email]> ha scritto:
>
>> Dear Valeria,
>> I'm afraid you need to be slightly more precise on your description.
>> By "trying to upload a dataset of images" I guess you want to open a stack
>> of pictures, right?
>> What is the size of this stack?
>> With Edit>Options>Memory_&_Threads... you can try to to increased the
>> reserved memory for ImageJ.
>> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
>> Performances of your machine and the Processes taking a lot of memory or
>> ressources.
>> My best regards,
>> Philippe
>>
>> Philippe CARL
>> Laboratoire de Bioimagerie et Pathologies
>> UMR 7021 CNRS - Université de Strasbourg
>> Faculté de Pharmacie
>> 74 route du Rhin
>> <https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&source=g>
>> 67401 ILLKIRCH
>> Tel : +33(0)3 68 85 42 89
>>
>> ----- Mail original -----
>> De: "Valeria Ianneci" <[hidden email]>
>> À: "imagej" <[hidden email]>
>> Envoyé: Mercredi 31 Mars 2021 15:32:34
>> Objet: Problems with ImageJ program
>>
>> Good afternoon,
>>
>> my name is Valeria and I am a student from Italy.
>>
>> I am having some troubles using ImageJ lately. Everytime I try to upload a
>> dataset of images the program stops working and my entire computer is
>> impaired.
>>
>> On my laptop I have installed Windows 10 Pro. May this be the problem? Is
>> there a specific version of ImageJ that I have to use?
>>
>> I really do not know how to fix this problem, so please let me know if you
>> do.
>>
>> My best regards,
>> Valeria
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

CARL Philippe (LBP)

Re: Problems with ImageJ program

Dear Valeria,
In the case the solution proposed by Herbie isn't solving your issue, you should really spy on your computer to locate the origin of your memory issue.

> Basically it uploads the stack up until a certain point and then the
> program literally stops working. I have to close it and try to lunch the
> program again.

Actually when this happens, ImageJ isn't crashed but you just need to be patient until the process resumes its work.
Due to the pandemic situation, I'm stuck at home using a machine which is really not powerful and in order to perform some calculations, I have no other choices than to sometimes close my internet browser (which is taking a lot of ressources) for them to be completed.

My best regards,

Philippe

----- Mail original -----
De: "l16" <[hidden email]>
À: "imagej" <[hidden email]>
Envoyé: Mercredi 31 Mars 2021 16:15:07
Objet: Re: Problems with ImageJ program

Did you try opening your stacks as virtual stacks?
This should work independent of the stack size.

Regards

Herbie

:::::::::::::::::::::::::::::::::::::::::::::
Am 31.03.21 um 16:09 schrieb Valeria Ianneci:

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Valeria Ianneci

Re: Problems with ImageJ program

Ok I see.

When the program doesn’t work, does it happens to you to have also such
message: “unknown hard error”?

Il giorno mer 31 mar 2021 alle 16:29 CARL Philippe (LBP) <
[hidden email]> ha scritto:

> Dear Valeria,
> In the case the solution proposed by Herbie isn't solving your issue, you
> should really spy on your computer to locate the origin of your memory
> issue.
>
> > Basically it uploads the stack up until a certain point and then the
> > program literally stops working. I have to close it and try to lunch the
> > program again.
>
> Actually when this happens, ImageJ isn't crashed but you just need to be
> patient until the process resumes its work.
> Due to the pandemic situation, I'm stuck at home using a machine which is
> really not powerful and in order to perform some calculations, I have no
> other choices than to sometimes close my internet browser (which is taking
> a lot of ressources) for them to be completed.
>
> My best regards,
>
> Philippe
>
> ----- Mail original -----
> De: "l16" <[hidden email]>
> À: "imagej" <[hidden email]>
> Envoyé: Mercredi 31 Mars 2021 16:15:07
> Objet: Re: Problems with ImageJ program
>
> Did you try opening your stacks as virtual stacks?
> This should work independent of the stack size.
>
> Regards
>
> Herbie
>
> :::::::::::::::::::::::::::::::::::::::::::::
> Am 31.03.21 um 16:09 schrieb Valeria Ianneci:
> > Yes I’m trying to open a stack of pictures. They are in the TIF format.
> >
> > The stack is pretty big, there are about 1500 pictures. But the program
> has
> > worked in the past with stacks of similar size.
> >
> > I have already tried to increase the memory but the problem wasn’t
> solved.
> >
> > Basically it uploads the stack up until a certain point and then the
> > program literally stops working. I have to close it and try to lunch the
> > program again.
> >
> > Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
> > [hidden email]> ha scritto:
> >
> >> Dear Valeria,
> >> I'm afraid you need to be slightly more precise on your description.
> >> By "trying to upload a dataset of images" I guess you want to open a
> stack
> >> of pictures, right?
> >> What is the size of this stack?
> >> With Edit>Options>Memory_&_Threads... you can try to to increased the
> >> reserved memory for ImageJ.
> >> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
> >> Performances of your machine and the Processes taking a lot of memory or
> >> ressources.
> >> My best regards,
> >> Philippe
> >>
> >> Philippe CARL
> >> Laboratoire de Bioimagerie et Pathologies
> >> UMR 7021 CNRS - Université de Strasbourg
> >> Faculté de Pharmacie
> >> 74 route du Rhin
> >> <
> https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&source=g>
> >> 67401 ILLKIRCH
> >> Tel : +33(0)3 68 85 42 89
> >>
> >> ----- Mail original -----
> >> De: "Valeria Ianneci" <[hidden email]>
> >> À: "imagej" <[hidden email]>
> >> Envoyé: Mercredi 31 Mars 2021 15:32:34
> >> Objet: Problems with ImageJ program
> >>
> >> Good afternoon,
> >>
> >> my name is Valeria and I am a student from Italy.
> >>
> >> I am having some troubles using ImageJ lately. Everytime I try to
> upload a
> >> dataset of images the program stops working and my entire computer is
> >> impaired.
> >>
> >> On my laptop I have installed Windows 10 Pro. May this be the problem?
> Is
> >> there a specific version of ImageJ that I have to use?
> >>
> >> I really do not know how to fix this problem, so please let me know if
> you
> >> do.
> >>
> >> My best regards,
> >> Valeria
> >>
> >> --
> >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >>
> >> --
> >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >>
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

CARL Philippe (LBP)

Re: Problems with ImageJ program

Hi again,
No when I get these issues ImageJ just gets stuck for a while, resumes its work later, and so on.
But I don't get any error message especially the kind you get.
I'm afraid that you have some serious issues with your computer, maybe with your memory chip.
But probably someone more expert could give you more hints.
My best regards,
Philippe

----- Mail original -----
De: "Valeria Ianneci" <[hidden email]>
À: "imagej" <[hidden email]>
Envoyé: Mercredi 31 Mars 2021 17:23:02
Objet: Re: Problems with ImageJ program

Ok I see.

When the program doesn’t work, does it happens to you to have also such
message: “unknown hard error”?

Il giorno mer 31 mar 2021 alle 16:29 CARL Philippe (LBP) <
[hidden email]> ha scritto:

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Wayne Rasband-2

Re: Problems with ImageJ program

In reply to this post by Valeria Ianneci

> On Mar 31, 2021, at 10:09 AM, Valeria Ianneci <[hidden email]> wrote:
>
> Yes I’m trying to open a stack of pictures. They are in the TIF format.
>
> The stack is pretty big, there are about 1500 pictures. But the program has
> worked in the past with stacks of similar size.

Hi Valeria,

Try opening the stack using the File>Import>TIFF Virtual Stack command, which requires a lot less memory.

It would help if you could give the width and height of the images in pixels and the image type (8-bit, 16-bit, 32-bit or RGB). It would also help to know how much RAM your machine has and the value of “Maximum memory” in the Edit>Options>Memory and Threads dialog.

-wayne

>
> I have already tried to increase the memory but the problem wasn’t solved.
>
> Basically it uploads the stack up until a certain point and then the
> program literally stops working. I have to close it and try to lunch the
> program again.
>
> Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
> [hidden email]> ha scritto:
>
>> Dear Valeria,
>> I'm afraid you need to be slightly more precise on your description.
>> By "trying to upload a dataset of images" I guess you want to open a stack
>> of pictures, right?
>> What is the size of this stack?
>> With Edit>Options>Memory_&_Threads... you can try to to increased the
>> reserved memory for ImageJ.
>> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
>> Performances of your machine and the Processes taking a lot of memory or
>> ressources.
>> My best regards,
>> Philippe
>>
>> Philippe CARL
>> Laboratoire de Bioimagerie et Pathologies
>> UMR 7021 CNRS - Université de Strasbourg
>> Faculté de Pharmacie
>> 74 route du Rhin
>> <https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&source=g>
>> 67401 ILLKIRCH
>> Tel : +33(0)3 68 85 42 89
>>
>> ----- Mail original -----
>> De: "Valeria Ianneci" <[hidden email]>
>> À: "imagej" <[hidden email]>
>> Envoyé: Mercredi 31 Mars 2021 15:32:34
>> Objet: Problems with ImageJ program
>>
>> Good afternoon,
>>
>> my name is Valeria and I am a student from Italy.
>>
>> I am having some troubles using ImageJ lately. Everytime I try to upload a
>> dataset of images the program stops working and my entire computer is
>> impaired.
>>
>> On my laptop I have installed Windows 10 Pro. May this be the problem? Is
>> there a specific version of ImageJ that I have to use?
>>
>> I really do not know how to fix this problem, so please let me know if you
>> do.
>>
>> My best regards,
>> Valeria

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Cardone, Giovanni

Re: Problems with ImageJ program

In reply to this post by Valeria Ianneci

Hi,

could it be that the stack is corrupted? Can you open it in another visualization software?
Otherwise you can try to launch Fiji in debug mode (see https://imagej.net/Debugging.html#Command_line_debugging ). Basically you make a copy of the Fiji executable by changing the name into debug.exe (if on Windows) and launch it. A window should appear in addition to the regular GUI. Then try to load the file, and see if it throws some error message on this windows.

Giovanni

-----Original Message-----
From: ImageJ Interest Group <[hidden email]> On Behalf Of Valeria Ianneci
Sent: Wednesday, March 31, 2021 4:09 PM
To: [hidden email]
Subject: Re: Problems with ImageJ program

Yes I’m trying to open a stack of pictures. They are in the TIF format.

The stack is pretty big, there are about 1500 pictures. But the program has worked in the past with stacks of similar size.

I have already tried to increase the memory but the problem wasn’t solved.

Basically it uploads the stack up until a certain point and then the program literally stops working. I have to close it and try to lunch the program again.

Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) < [hidden email]> ha scritto:

> Dear Valeria,
> I'm afraid you need to be slightly more precise on your description.
> By "trying to upload a dataset of images" I guess you want to open a
> stack of pictures, right?
> What is the size of this stack?
> With Edit>Options>Memory_&_Threads... you can try to to increased the
> reserved memory for ImageJ.
> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
> Performances of your machine and the Processes taking a lot of memory
> or ressources.
> My best regards,
> Philippe
>
> Philippe CARL
> Laboratoire de Bioimagerie et Pathologies UMR 7021 CNRS - Université
> de Strasbourg Faculté de Pharmacie
> 74 route du Rhin
> <https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&sourc
> e=g>
> 67401 ILLKIRCH
> Tel : +33(0)3 68 85 42 89
>
> ----- Mail original -----
> De: "Valeria Ianneci" <[hidden email]>
> À: "imagej" <[hidden email]>
> Envoyé: Mercredi 31 Mars 2021 15:32:34
> Objet: Problems with ImageJ program
>
> Good afternoon,
>
> my name is Valeria and I am a student from Italy.
>
> I am having some troubles using ImageJ lately. Everytime I try to
> upload a dataset of images the program stops working and my entire
> computer is impaired.
>
> On my laptop I have installed Windows 10 Pro. May this be the problem?
> Is there a specific version of ImageJ that I have to use?
>
> I really do not know how to fix this problem, so please let me know if
> you do.
>
> My best regards,
> Valeria
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Valeria Ianneci

Re: Problems with ImageJ program

Thank you I’ll try that
Valeria

Il giorno mer 31 mar 2021 alle 18:20 Cardone, Giovanni <
[hidden email]> ha scritto:

> Hi,
>
> could it be that the stack is corrupted? Can you open it in another
> visualization software?
> Otherwise you can try to launch Fiji in debug mode (see
> https://imagej.net/Debugging.html#Command_line_debugging ). Basically you
> make a copy of the Fiji executable by changing the name into debug.exe (if
> on Windows) and launch it. A window should appear in addition to the
> regular GUI. Then try to load the file, and see if it throws some error
> message on this windows.
>
> Giovanni
>
>
>
> -----Original Message-----
> From: ImageJ Interest Group <[hidden email]> On Behalf Of Valeria
> Ianneci
> Sent: Wednesday, March 31, 2021 4:09 PM
> To: [hidden email]
> Subject: Re: Problems with ImageJ program
>
> Yes I’m trying to open a stack of pictures. They are in the TIF format.
>
> The stack is pretty big, there are about 1500 pictures. But the program
> has worked in the past with stacks of similar size.
>
> I have already tried to increase the memory but the problem wasn’t solved.
>
> Basically it uploads the stack up until a certain point and then the
> program literally stops working. I have to close it and try to lunch the
> program again.
>
> Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
> [hidden email]> ha scritto:
>
> > Dear Valeria,
> > I'm afraid you need to be slightly more precise on your description.
> > By "trying to upload a dataset of images" I guess you want to open a
> > stack of pictures, right?
> > What is the size of this stack?
> > With Edit>Options>Memory_&_Threads... you can try to to increased the
> > reserved memory for ImageJ.
> > Also (Windows feature) with Ctrl+Shift+Esc you can look at the
> > Performances of your machine and the Processes taking a lot of memory
> > or ressources.
> > My best regards,
> > Philippe
> >
> > Philippe CARL
> > Laboratoire de Bioimagerie et Pathologies UMR 7021 CNRS - Université
> > de Strasbourg Faculté
> <https://www.google.com/maps/search/sbourg+Facult%C3%A9+?entry=gmail&source=g>de
> Pharmacie
> > 74 route du Rhin
> > <https://www.google.com/maps/search/74+route+du+Rhin?entry=gmail&sourc
> > e=g>
> > 67401 ILLKIRCH
> > Tel : +33(0)3 68 85 42 89
> >
> > ----- Mail original -----
> > De: "Valeria Ianneci" <[hidden email]>
> > À: "imagej" <[hidden email]>
> > Envoyé: Mercredi 31 Mars 2021 15:32:34
> > Objet: Problems with ImageJ program
> >
> > Good afternoon,
> >
> > my name is Valeria and I am a student from Italy.
> >
> > I am having some troubles using ImageJ lately. Everytime I try to
> > upload a dataset of images the program stops working and my entire
> > computer is impaired.
> >
> > On my laptop I have installed Windows 10 Pro. May this be the problem?
> > Is there a specific version of ImageJ that I have to use?
> >
> > I really do not know how to fix this problem, so please let me know if
> > you do.
> >
> > My best regards,
> > Valeria
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Valeria Ianneci

Re: Problems with ImageJ program

In reply to this post by CARL Philippe (LBP)

Your are right. I’ll ask help to an expert.
Thank you anyway
Best regards,
Valeria

Il giorno mer 31 mar 2021 alle 17:56 CARL Philippe (LBP) <
[hidden email]> ha scritto:

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Robert Smith

Re: Problems with ImageJ program

Please excuse the interruption, however it may be a simple overlooked situation. First go to Plugins > Monitor memory and show the chart. Then load the images and watch the memory chart to see that it is loading. Many times, it simply takes far longer to load the images than expected. You simply have to be patient. You can tell when the images have finished loading when the chart “flat lines”.
Bob

Sent from Mail<https://go.microsoft.com/fwlink/?LinkId=550986> for Windows 10

From: Valeria Ianneci<mailto:[hidden email]>
Sent: Wednesday, March 31, 2021 12:30 PM
To: [hidden email]<mailto:[hidden email]>
Subject: Re: Problems with ImageJ program

Your are right. I’ll ask help to an expert.
Thank you anyway
Best regards,
Valeria

Il giorno mer 31 mar 2021 alle 17:56 CARL Philippe (LBP) <
[hidden email]> ha scritto:

> Hi again,
> No when I get these issues ImageJ just gets stuck for a while, resumes its
> work later, and so on.
> But I don't get any error message especially the kind you get.
> I'm afraid that you have some serious issues with your computer, maybe
> with your memory chip.
> But probably someone more expert could give you more hints.
> My best regards,
> Philippe
>
> ----- Mail original -----
> De: "Valeria Ianneci" <[hidden email]>
> À: "imagej" <[hidden email]>
> Envoyé: Mercredi 31 Mars 2021 17:23:02
> Objet: Re: Problems with ImageJ program
>
> Ok I see.
>
> When the program doesn’t work, does it happens to you to have also such
> message: “unknown hard error”?
>
> Il giorno mer 31 mar 2021 alle 16:29 CARL Philippe (LBP) <
> [hidden email]> ha scritto:
>
> > Dear Valeria,
> > In the case the solution proposed by Herbie isn't solving your issue, you
> > should really spy on your computer to locate the origin of your memory
> > issue.
> >
> > > Basically it uploads the stack up until a certain point and then the
> > > program literally stops working. I have to close it and try to lunch
> the
> > > program again.
> >
> > Actually when this happens, ImageJ isn't crashed but you just need to be
> > patient until the process resumes its work.
> > Due to the pandemic situation, I'm stuck at home using a machine which is
> > really not powerful and in order to perform some calculations, I have no
> > other choices than to sometimes close my internet browser (which is
> taking
> > a lot of ressources) for them to be completed.
> >
> > My best regards,
> >
> > Philippe
> >
> > ----- Mail original -----
> > De: "l16" <[hidden email]>
> > À: "imagej" <[hidden email]>
> > Envoyé: Mercredi 31 Mars 2021 16:15:07
> > Objet: Re: Problems with ImageJ program
> >
> > Did you try opening your stacks as virtual stacks?
> > This should work independent of the stack size.
> >
> > Regards
> >
> > Herbie
> >
> > :::::::::::::::::::::::::::::::::::::::::::::
> > Am 31.03.21 um 16:09 schrieb Valeria Ianneci:
> > > Yes I’m trying to open a stack of pictures. They are in the TIF format.
> > >
> > > The stack is pretty big, there are about 1500 pictures. But the program
> > has
> > > worked in the past with stacks of similar size.
> > >
> > > I have already tried to increase the memory but the problem wasn’t
> > solved.
> > >
> > > Basically it uploads the stack up until a certain point and then the
> > > program literally stops working. I have to close it and try to lunch
> the
> > > program again.
> > >
> > > Il giorno mer 31 mar 2021 alle 15:53 CARL Philippe (LBP) <
> > > [hidden email]> ha scritto:
> > >
> > >> Dear Valeria,
> > >> I'm afraid you need to be slightly more precise on your description.
> > >> By "trying to upload a dataset of images" I guess you want to open a
> > stack
> > >> of pictures, right?
> > >> What is the size of this stack?
> > >> With Edit>Options>Memory_&_Threads... you can try to to increased the
> > >> reserved memory for ImageJ.
> > >> Also (Windows feature) with Ctrl+Shift+Esc you can look at the
> > >> Performances of your machine and the Processes taking a lot of memory
> or
> > >> ressources.
> > >> My best regards,
> > >> Philippe
> > >>
> > >> Philippe CARL
> > >> Laboratoire de Bioimagerie et Pathologies
> > >> UMR 7021 CNRS - Université de Strasbourg
> > >> Faculté de Pharmacie
> > >> 74 route du Rhin
> > >> <
> > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.google.com%2Fmaps%2Fsearch%2F74%2Broute%2Bdu%2BRhin%3Fentry%3Dgmail%26source%3Dg&data=04%7C01%7C%7C7eeb182aa82c4ff29e0d08d8f4624669%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637528050213230252%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=MRNgdI0vGIKddIG0YtJayJWvua3Q%2F1m91TmaSGnP93g%3D&reserved=0
> >
> > >> 67401 ILLKIRCH
> > >> Tel : +33(0)3 68 85 42 89
> > >>
> > >> ----- Mail original -----
> > >> De: "Valeria Ianneci" <[hidden email]>
> > >> À: "imagej" <[hidden email]>
> > >> Envoyé: Mercredi 31 Mars 2021 15:32:34
> > >> Objet: Problems with ImageJ program
> > >>
> > >> Good afternoon,
> > >>
> > >> my name is Valeria and I am a student from Italy.
> > >>
> > >> I am having some troubles using ImageJ lately. Everytime I try to
> > upload a
> > >> dataset of images the program stops working and my entire computer is
> > >> impaired.
> > >>
> > >> On my laptop I have installed Windows 10 Pro. May this be the problem?
> > Is
> > >> there a specific version of ImageJ that I have to use?
> > >>
> > >> I really do not know how to fix this problem, so please let me know if
> > you
> > >> do.
> > >>
> > >> My best regards,
> > >> Valeria
> > >>
> > >> --
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> > >>
> > >> --
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> > >>
> > >
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> > >
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