Problems with TrakEM2 after Fiji update Aug 5th 2013

[Luisa de Vivo]

Hi,

I'm using TrakEM2 to segment different objects in a stack of images.

Everything was working fine up to today Aug 5, 2013 when I updated Fiji
(Windows 64bit), as I do almost everyday.
Now I cannot change the color of the new area lists I create. Everything
else is working, but for me is very convenient to have different color for
the area lists. This seems a bug related to the update because the problem
is gone If I install the life-line version of July 15.

I just thought you might want to know and try to fix this issue otherwise
it will be impossible for me and other TrakEM2 users to download the later
updates of fiji.

Thank you very much,

Luisa


--
Luisa de Vivo, PhD
Department of Psychiatry
University of Wisconsin
6001 Research Park Boulevard
Madison WI 53719

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[dscho]

Hi Luisa,

On Mon, 5 Aug 2013, Luisa de Vivo wrote:

> I'm using TrakEM2 to segment different objects in a stack of images.
>
> Everything was working fine up to today Aug 5, 2013 when I updated Fiji
> (Windows 64bit), as I do almost everyday.  Now I cannot change the color
> of the new area lists I create. Everything else is working, but for me
> is very convenient to have different color for the area lists. This
> seems a bug related to the update because the problem is gone If I
> install the life-line version of July 15.
>
> I just thought you might want to know and try to fix this issue
> otherwise it will be impossible for me and other TrakEM2 users to
> download the later updates of fiji.

Thank you for the bug report. I would like to ask you to help by assisting
me in tracking down this bug: may I ask you to follow these instructions
to obtain the command-line output?

        http://fiji.sc/Debugging#Windows_.26_Linux

Thanks,
Johannes

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[dscho]

Hi Luisa,

On Tue, 6 Aug 2013, Johannes Schindelin wrote:

> On Mon, 5 Aug 2013, Luisa de Vivo wrote:
>
> > I'm using TrakEM2 to segment different objects in a stack of images.
> >
> > Everything was working fine up to today Aug 5, 2013 when I updated
> > Fiji (Windows 64bit), as I do almost everyday.  Now I cannot change
> > the color of the new area lists I create. Everything else is working,
> > but for me is very convenient to have different color for the area
> > lists. This seems a bug related to the update because the problem is
> > gone If I install the life-line version of July 15.
> >
> > I just thought you might want to know and try to fix this issue
> > otherwise it will be impossible for me and other TrakEM2 users to
> > download the later updates of fiji.
>
> Thank you for the bug report. I would like to ask you to help by
> assisting me in tracking down this bug: may I ask you to follow these
> instructions to obtain the command-line output?
>
> http://fiji.sc/Debugging#Windows_.26_Linux

Thank you for the output (which you sent to me personally to avoid
cluttering the list) and for letting me work on your computer for two
hours (because I could still not make heads nor tails from the console
log).

It turns out that some debugging code I put into ij.jar in order to test
something locally crept into the version I uploaded to the update site
yesterday [*1*]. Re-uploading 1.48a from the fresh version provided by
Jenkins/Maven fixed the problem (and I will be more careful in the
future... ;-).

Thank you again, was great meeting you!
Johannes

Footnote *1*: For interested lurkers: a subtle bug bit me where the Java
compiler inlined IJEventListener.FOREGROUND_COLOR_CHANGED into the
compiled ij.gui.Toolbar class and failed to recompile said class when I
changed the constant back to 0 (from 0xcafebabe for testing purposes).

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