Question about Filling Holes

[Mohamed Tleis]

Dear Folks,

1. I have a binary image, and I applied fill holes , recording the
javascript gave me IJ.run(imp, "Fill Holes", "");
I am more concerned in inspecting the source code of that function, i tried
to look into IJ source code, Logically it is supposed to be under
ij.process binaryprocessor class, but it is not there.

2. I would like to know how to mark holes that are already filled.

3. How to remove the filled holes (copy them to another image).

Thanks in advance,

Best Regards,
Mohamed Tleis

[dscho]

Hi,

On Fri, 9 Dec 2011, Mohammed Tlais wrote:

> 1. I have a binary image, and I applied fill holes , recording the
> javascript gave me IJ.run(imp, "Fill Holes", "");
> I am more concerned in inspecting the source code of that function, i tried
> to look into IJ source code, Logically it is supposed to be under
> ij.process binaryprocessor class, but it is not there.

In Fiji, use Plugins>Scripting>Open Source for Menu Item and click on the
menu item you want the source code for.

There is no Binary Processor, and I disagree that all the plugins working
on binary images should be internalized into the ByteProcessor class :-)

Ciao,
Johannes