ROI Manager

[Philip Ershler]

Hi,
        I have a job where I need to specify two rectangular ROIs. Then I need to apply each of the two ROIs, one at a time to the first slice in a stack and make some measurements in each ROI. Then I need to select the next slice in the stack and apply the same two ROIs, one at a time to the current stack slice and repeat the same measurements in each ROI. I need to repeat this process for all the slices in the stack. I thought that this would be a job for the ROI manager. But, the ROIs in the ROI Manager are locked to the first slice in the stack.
        Suggestions?

Thanks, Phil

Philip R. Ershler Ph.D.
University of Utah
Cardiovascular Research and Training Institute
95 South 2000 East
Salt Lake City, UT 84112-5000

phone: [phone]
alt ph: [phone]
fax: [phone]
e-mail: [hidden email]

[fabrice senger-2]

Hi,

you might process your stack as an image sequence and run your macro
in batch mode...not elegant but it should work.

Fabrice.

2011/11/27, Philip Ershler <[hidden email]>:

> Hi,
> I have a job where I need to specify two rectangular ROIs. Then I need to
> apply each of the two ROIs, one at a time to the first slice in a stack and
> make some measurements in each ROI. Then I need to select the next slice in
> the stack and apply the same two ROIs, one at a time to the current stack
> slice and repeat the same measurements in each ROI. I need to repeat this
> process for all the slices in the stack. I thought that this would be a job
> for the ROI manager. But, the ROIs in the ROI Manager are locked to the
> first slice in the stack.
> Suggestions?
>
> Thanks, Phil
>
> Philip R. Ershler Ph.D.
> University of Utah
> Cardiovascular Research and Training Institute
> 95 South 2000 East
> Salt Lake City, UT 84112-5000
>
> phone: [phone]
> alt ph: [phone]
> fax: [phone]
> e-mail: [hidden email]
>

... [show rest of quote]

[Winfried Wurm]

Hi Phil,

I think ROI Manager--> More --> "Remove Slice Info"  or if you call it from
a macro roiManager("Remove Slice Info");
should solve your Problem. Just call it after you defined your ROIs and you
can measure them in every Slice you want to.

Best
Winfried


-----Ursprüngliche Nachricht-----
From: Philip Ershler
Sent: Sunday, November 27, 2011 7:01 AM
To: [hidden email]
Subject: ROI Manager

Hi,
I have a job where I need to specify two rectangular ROIs. Then I need to
apply each of the two ROIs, one at a time to the first slice in a stack and
make some measurements in each ROI. Then I need to select the next slice in
the stack and apply the same two ROIs, one at a time to the current stack
slice and repeat the same measurements in each ROI. I need to repeat this
process for all the slices in the stack. I thought that this would be a job
for the ROI manager. But, the ROIs in the ROI Manager are locked to the
first slice in the stack.
Suggestions?

Thanks, Phil

Philip R. Ershler Ph.D.
University of Utah
Cardiovascular Research and Training Institute
95 South 2000 East
Salt Lake City, UT 84112-5000

phone: [phone]
alt ph: [phone]
fax: [phone]
e-mail: [hidden email]