Re: AnalyzeSkeleton plugin - question

[Ignacio Arganda-Carreras-2]

Hello Szabolcs,

Yes, you can get all the coordinates from the graphs that are stored for
all skeletons. Just use the getGraphs() method:

https://github.com/fiji/AnalyzeSkeleton/blob/master/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java#L649-L656

Remember there will be one graph per skeleton and each graph has its list
of edges and vertices.

Let me know if you need more help!

ignacio

On Wed, Sep 23, 2015 at 3:01 PM, szu <[hidden email]> wrote:

> Dear Ignacio,
>
> I'm using the AnalyzeSkeleton Fiji plugin in my own plugin and I need the
> coordinates of the junction points (V1 and V2 in the branch information
> window), how can I get it in "silent mode"? I got the points from the
> result table, but I need the mentioned points. Can you help me?
>
> Thanks,
>
> Szabolcs U.
>

--
Ignacio Arganda-Carreras, Ph.D.
Ikerbasque Research Fellow
Departamento de Ciencias de la Computacion e Inteligencia Artificial
Facultad de Informatica, Universidad del Pais Vasco
Paseo de Manuel Lardizabal, 1
20018 Donostia-San Sebastian
Guipuzcoa, Spain

Phone : [phone]
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html