Well, the problem I had was that I wanted to be able to use the Multi
Measure functionality, which was its ability to record data from
multiple ROIs across the entire t-series. I looked into programming
that into the macro, becuase as you mention then I can use the ROI
manager commands, but I couldn't figure out how to get the same
function as Multi Measure through the macro. What I ended up doing was
altering the Multi Measure plugin to include the features I wanted in
the macro, namely the automatic generation of ROI's based on
particles, and also some niceties such as automatically saving ROIs,
the data, etc. This worked well because I was able to use
Multimeasure's methods, since my addition was simply another button (&
command) inside multimeasure. I would imagine it is possible to use
ROI manager to have Multi Measure's capabilities through a macro, but
altering the code of MM worked fine for me in this case.
Thanks
Michael Chelen
On 9/23/05, Jonathan Jackson <
[hidden email]> wrote:
> Is it possible to use the builtin ROI manager function rather than Multi
> measure (for differences see
>
http://www.optinav.com/ImageJplugins/Multi-Measure.htm )
> With the builtin you have access to the ROI manager macro commands which
> could automate the task:
>
> roiManager(cmd)
> Runs an ROI Manager command, where cmd must be "Add", "Add & Draw",
> "Deselect", "Measure", "Draw" or "Combine". The ROI Manager is opened if it
> is not already open. With v1.34k or later, use roiManager("reset") to delete
> all items on the list. For examples, refer to the RoiManagerMacros,
> RoiManagerAddParticles and ROI Manager Stack Demo macros. Requires v1.33f.
>
> Regards,
> Jon
>
> >Hello, I am trying to make a macro that will create ROI's based on a binary
> >mask, then measure those ROIs through a 500 frame stack, and save the data.
> >The macro that I've written does all of this fine, except for the
> >measurement step, when I use the MultiMeasure plugin that's part of the WCIF
> >plugin set. This works great, but the user mus manually press the buttons on
> >the MultiMeasure panel to run the measurement command. Is there any way for
> >me to automate this step? Either from within a macro or within a plugin? I
> >don't have much experience with java in ImageJ, so any help would be
> >appreciated.
> >Thanks
> >Michael Chelen
> >========================================================================
>
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