On Jun 18, 2012, at 9:48 AM, "Chen, Guoyou" <
[hidden email]> wrote:
> Dear Mr. Cardona,
>
> I am using the TrakEM2 plugin you developed for ImageJ to reconstruct neuronal features on EM images. However, I have been encountering an error for a stack of images. When going from one layer to the next, the log gives me an error that says it cannot regenerate mipmaps for the patch. The System log gives the following message:
>
> "E:/trakem2.1338996849304.1552831262.1957569947/trakem2.mipmaps/4/27.stitched.run1_Pos3.0006.dm3.tif.rag
> E:/trakem2.1338996849304.1552831262.1957569947/trakem2.mipmaps/6/27.stitched.run1_Pos3.0006.dm3.tif.rag
> E:/trakem2.1338996849304.1552831262.1957569947/trakem2.mipmaps/6/27.stitched.run1_Pos3.0006.dm3.tif.rag
> E:/trakem2.1338996849304.1552831262.1957569947/trakem2.mipmaps/7/27.stitched.run1_Pos3.0006.dm3.tif.rag
> E:/trakem2.1338996849304.1552831262.1957569947/trakem2.mipmaps/7/27.stitched.run1_Pos3.0006.dm3.tif.rag"
>
> I haven't been able to find any information regarding this online and I was wondering if you could provide any help or insight on this issue.
>
Chen,
The error you saw indicates that the temporary files needed by TrakEM2 cannot be written to disk. Check if the disk is full and that you have permission to write to the chosen storage folder for TrakEM2. It is also possible that the original dm3 file of each image tile (a Patch, in TrakEM2 parlance) cannot be found.
Albert
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