Reading ROI manager

[rabih assaf-2]

Hello,
Is there a macro or plugin or.... to read  a list of ROIs one by one from a ROI manager.
Thanks in advance    
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[gankaku]

Hi rabih,

short option to your question:

//macro start----------------

for(i=0; i<roiManager("count"); i++) {
   roiManager("select", i);
   //add here what should be done after the roi is selected
}
//macro end------------------


if you want to measure the pixels and other parameters inside each ROI the
simple command:

roiManager("Measure");

is normally sufficient to cycle through the ROIS and run a measurement
according to what is set active in >Analyze >Set Measurement.
For images with multiple slices, where each ROI should be measured in each
slice you will need to use the "Multi Measure" command of the ROI Manager
instead.

cheers,
Jan

2015-04-01 11:22 GMT+02:00 rabih assaf <[hidden email]>:

> Hello,
> Is there a macro or plugin or.... to read  a list of ROIs one by one from
> a ROI manager.
> Thanks in advance
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>



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