Hi Kyle,
Sorry for the long delay in reply.
> Is it possible to have a script in FIJI take command line arguments
> for a non-GUI/headless scenario?
I investigated briefly a while back, and AFAICT you cannot pass parameters
like that. But of course you should be able to do it. So I filed an issue:
https://github.com/imagej/imagej/issues/121Regards,
Curtis
On Sun, Jan 18, 2015 at 9:40 AM, Kyle Harrington <
[hidden email]
> wrote:
> Hello ImageJists,
>
> Is it possible to have a script in FIJI take command line arguments for a
> non-GUI/headless scenario? i.e.
>
> ImageJ-linux64 —headless fiji-plugins/HelloWorld.clj lena.jpg
>
> This treats the jpg as another clojure script. I've tried a few different
> combinations and checked "*command-line-args*" from the clojure script, but
> I still haven't found a way to access the arguments. Noting that I would
> really like to be able to pass other arguments like floating-points, but
> just being able to specify images would be enough for now.
>
> Thank you,
> Kyle
>
> --
> Dr Kyle I S Harrington
> Postdoctoral Researcher
> Bentley Group, Computational Biology Lab
> Center for Vascular Biology Research,
> Beth Israel Deaconess Medical Center
> Harvard Medical School, Boston, MA
>
> web:
http://www.kyleharrington.com>
>
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