Simple Neurite tracer exceptions

[Glen MacDonald-2]

Hi,
I'm trying the Simple Neurite Tracer plugin with Fiji for the first time.
Fresh download of Fiji, checked for updates, MacPro and MacBookPro, OSX 10.6.3, 4 Gb and 2 Gb RAM (respectively) assigned to Fiji with datasets in the 20-30 Mb range.
This exception appears as soon as the plugin is called.  Any suggestions as to the source of the problem?  

java.lang.NoSuchMethodError: tracing.PathAndFillManager.<init>(Ltracing/Simple_Neurite_Tracer;)V
        at tracing.Simple_Neurite_Tracer.run(Simple_Neurite_Tracer.java:1054)
        at ij.IJ.runUserPlugIn(IJ.java:181)
        at ij.IJ.runPlugIn(IJ.java:147)
        at ij.Executer.runCommand(Executer.java:143)
        at ij.Executer.run(Executer.java:75)
        at java.lang.Thread.run(Thread.java:637)

Thanks,
Glen


Glen MacDonald
Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]

[dscho]

Hi Glen,

On Tue, 30 Mar 2010, Glen MacDonald wrote:

> I'm trying the Simple Neurite Tracer plugin with Fiji for the first
> time. Fresh download of Fiji, checked for updates, MacPro and
> MacBookPro, OSX 10.6.3, 4 Gb and 2 Gb RAM (respectively) assigned to
> Fiji with datasets in the 20-30 Mb range. This exception appears as soon
> as the plugin is called.  Any suggestions as to the source of the
> problem?
>
> java.lang.NoSuchMethodError: tracing.PathAndFillManager.<init>(Ltracing/Simple_Neurite_Tracer;)V

Thanks for the bug report. This was caused by a recent split of .jar files
that I performed, in the hope of cleaning up things a little.
Unfortunately, I my tests were performed in an environment where
everything worked by mistake.

Please update Fiji, the problems should be gone now.

Ciao,
Johannes

[Glen MacDonald-2]

Thank you Johannes,
It works now and I'm exploring what it can do.

Regards,
Glen


On Mar 31, 2010, at 5:16 AM, Johannes Schindelin wrote:

> Hi Glen,
>
> On Tue, 30 Mar 2010, Glen MacDonald wrote:
>
>> I'm trying the Simple Neurite Tracer plugin with Fiji for the first
>> time. Fresh download of Fiji, checked for updates, MacPro and
>> MacBookPro, OSX 10.6.3, 4 Gb and 2 Gb RAM (respectively) assigned to
>> Fiji with datasets in the 20-30 Mb range. This exception appears as soon
>> as the plugin is called.  Any suggestions as to the source of the
>> problem?
>>
>> java.lang.NoSuchMethodError: tracing.PathAndFillManager.<init>(Ltracing/Simple_Neurite_Tracer;)V
>
> Thanks for the bug report. This was caused by a recent split of .jar files
> that I performed, in the hope of cleaning up things a little.
> Unfortunately, I my tests were performed in an environment where
> everything worked by mistake.
>
> Please update Fiji, the problems should be gone now.
>
> Ciao,
> Johannes