Hi Aurelien,
Mark Longhair (Neurite Tracer author) gave me a script here to analyze
traces files in term of intensity, maybe this can help:
https://groups.google.com/forum/#!topic/fiji-users/8Bnqn9kJg5EI didn't test it because in the end I used NeuronJ to trace neurites
(actually using two successive tracings on XY and XZ projections to trace
in 3D)
Christophe
2014-02-18 16:17 GMT+01:00 Aurélien Dauphin <
[hidden email]>:
> Dear ImageJ list,
>
> I work with Simple Neurite tracer and make traces of neurons. I save these
> traces in .swc format and would love to use the coordinates (x, y, z) of
> each voxels along the traces in a macro.
>
> Have you any idea of how I can do that ?
>
> My aim would be to get the voxel intensity at that coordinate in my color
> channel images and then make a Plot profile in 3D for each channel.
>
> Thanks in advance
> Aurélien
>
> --
> Dr. Aurélien Dauphin
>
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