StackReg not working!

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StackReg not working!

cdiscenz
Hi Everybody,
I'm new to ImageJ and I would like to register a large number of coronal brain slices from a rat. I tried using StackReg to do this, however after running the plugin, the images were definitely NOT registered. I believe this is due to the fact that unlike turboReg, it never allowed me to manually set the reference points on the reference image. I am not sure how to make this work. Does anyone have any advice? Please?
Thanks and have a great week,
Claire
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Re: StackReg not working!

Albert Cardona
Claire,

> this is due to the fact that unlike turboReg, it never allowed me to
> manually set the reference points on the reference image. I am not sure how
> to make this work. Does anyone have any advice? Please?
> Thanks and have a great week,
> Claire
>  


I refer you to an alternative plugin for image registration in ImageJ:

http://www.ini.uzh.ch/~acardona/howto.html#register_virtual_stack

Albert

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona