Starting

[Alba Muñoz Suano]

Hi,

I've just started with the program and I find it a bit difficult,
I want to track some cells during a time-lapse image sequence, is
this possible in imageJ? is there any manual for beginners that I
can start with?

Thanks

Alba

[Paolo Ariano]

Il giorno ven, 26/09/2008 alle 15.55 +0200, Alba Muñoz Suano ha scritto:
> Hi,
>
> I've just started with the program and I find it a bit difficult,
> I want to track some cells during a time-lapse image sequence, is
> this possible in imageJ? is there any manual for beginners that I
> can start with?

nothing is simple but yes there is a lot things about tracking objects:

google: imagej plugins you will find:
http://rsbweb.nih.gov/ij/plugins/

now in the page search for track and you will find:
Object Tracker
MultiTracker
Manual Tracking
Nico Stuurman MultiTracker2
SpotTracker (particle tracking over noisy image sequences)
ParticleTracker (particle detection and tracking from digital videos)
MTrackJ (track and analyze moving objects in image sequences)

hth
paolo
--
NeuroScience PhD
Post-doc @ University of Torino
www.personalweb.unito.it/paolo.ariano
www.cellular-neurophysiology.unito.it
www.mieleria.it

[Christian Lutz]

http://bigwww.epfl.ch/sage/soft/spottracker/
or maybe
http://rsb.info.nih.gov/ij/plugins/track/track.html (with manuel)

I hope this helps or maybe (probably ;) ) somebody else has a better  
idea.

Sincerley
Christian

Am 26.09.2008 um 15:55 schrieb Alba Muñoz Suano:

> Hi,
>
> I've just started with the program and I find it a bit difficult, I  
> want to track some cells during a time-lapse image sequence, is this  
> possible in imageJ? is there any manual for beginners that I can  
> start with?
>
> Thanks
>
> Alba

[Knecht, David]

We like mTrackJ and the manual is at: http://www.imagescience.org/meijering/software/mtrackj/manual.html

On Sep 26, 2008, at 10:33 AM, Christian Lutz wrote:

> http://bigwww.epfl.ch/sage/soft/spottracker/
> or maybe
> http://rsb.info.nih.gov/ij/plugins/track/track.html (with manuel)
>
> I hope this helps or maybe (probably ;) ) somebody else has a better  
> idea.
>
> Sincerley
> Christian
>
> Am 26.09.2008 um 15:55 schrieb Alba Muñoz Suano:
>
>> Hi,
>>
>> I've just started with the program and I find it a bit difficult, I  
>> want to track some cells during a time-lapse image sequence, is  
>> this possible in imageJ? is there any manual for beginners that I  
>> can start with?
>>
>> Thanks
>>
>> Alba

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)

[Nicholas J. Stam]

Hi Alba,

I am new to the program as well. I just sent a message out to the group,
which you might see. I am also trying to track cell movement by time-lapse.
My method differs in that I import an AVI file into the program, which can
be accomplished through the AVI reader plug-in. If either of us have any
specific problems, maybe we could work through them together.

This website may be helpful to you: http://rsb.info.nih.gov/ij/docs/

Nick Stam

On Fri, Sep 26, 2008 at 9:55 AM, Alba Muñoz Suano <[hidden email]> wrote:

> Hi,
>
> I've just started with the program and I find it a bit difficult, I want to
> track some cells during a time-lapse image sequence, is this possible in
> imageJ? is there any manual for beginners that I can start with?
>
> Thanks
>
> Alba
>

[Alba Muñoz Suano]

Thanks everyone!!

Alba



El dia 26 sep 2008 16:33, Christian Lutz
<[hidden email]> escribió:

> http://bigwww.epfl.ch/sage/soft/spottracker/
> or maybe
> http://rsb.info.nih.gov/ij/plugins/track/track.html (with manuel)
>
> I hope this helps or maybe (probably ;) ) somebody else has a
> better  idea.
>
> Sincerley
> Christian
>
> Am 26.09.2008 um 15:55 schrieb Alba Muñoz Suano:
>
>> Hi,
>>
>> I've just started with the program and I find it a bit
>> difficult, I  want to track some cells during a time-lapse image
>> sequence, is this  possible in imageJ? is there any manual for
>> beginners that I can  start with?
>>
>> Thanks
>>
>> Alba
>
>
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Alba