Hello, I've still a stack problem... and I-m really stuck at this point... I would like to open a file containing 12 images (using list Opener) , make a stack and then a montage on imageJ. As I have already an image open on imageJ, this last is incorporated in the stack with my other 12 images when I run ("Convert images to Stack") and I don-t want that ! How can I do to ignore this image that has to stay open when I make the stack? I'm sure there is a way of doing this, but I cannot found out... By the way, Large Montage still doesn-t work... plugin not found when I run it. Even though I have all the files that I need ! I might have done something wrong, but i don-t know what ! I run imageJ bundled with Java. Any suggestions ? many thanks france |
Hi,
I don't know if anyone has suggested this yet, but did you take a look at the tutorial by Cyndy Erickson and Janet Campbell? http://www.cooa.unh.edu/tutorial.jsp It explains how to make stacks and montages in ImageJ, and might be usefull. If the plugin fails to work, you might try to compile and run the source code. If it says javac is not found, then it ImageJ is probably not started with the JVM you want it to start with. You do have the 'tools.jar' file in your 'lib/ext' of the JVM that runs ImageJ, do you? Greetings, Edwin > > Hello, > I've still a stack problem... and I-m really stuck at this point... > I would like to open a file containing 12 images (using list Opener) , make a stack and then a montage on imageJ. > > As I have already an image open on imageJ, this last is incorporated in the stack with my other 12 images when I run ("Convert images to Stack") and I don-t want that ! > How can I do to ignore this image that has to stay open when I make the stack? I'm sure there is a way of doing this, but I cannot found out... > > By the way, Large Montage still doesn-t work... plugin not found when I run it. Even though I have all the files that I need ! I might have done something wrong, but i don-t know what ! I run imageJ bundled with Java. > > Any suggestions ? > > many thanks > > france > |
Hello,
I looked at this tutorial and found my answer... I have to open the pictures as images sequence and then it works well. And I also finally managed to open the plugin "Large Montage". I don't know what was wrong, but it was not the tools.jar... But I haven't tried it yet due to harware problems. Cheers, france -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Commandeur Sent: dimanche, 2. juillet 2006 11:59 To: [hidden email] Subject: Re: Still stack problem Hi, I don't know if anyone has suggested this yet, but did you take a look at the tutorial by Cyndy Erickson and Janet Campbell? http://www.cooa.unh.edu/tutorial.jsp It explains how to make stacks and montages in ImageJ, and might be usefull. If the plugin fails to work, you might try to compile and run the source code. If it says javac is not found, then it ImageJ is probably not started with the JVM you want it to start with. You do have the 'tools.jar' file in your 'lib/ext' of the JVM that runs ImageJ, do you? Greetings, Edwin > > Hello, > I've still a stack problem... and I-m really stuck at this point... > I would like to open a file containing 12 images (using list Opener) , make a stack and then a montage on imageJ. > > As I have already an image open on imageJ, this last is incorporated in the stack with my other 12 images when I run ("Convert images to Stack") and I don-t want that ! > How can I do to ignore this image that has to stay open when I make the stack? I'm sure there is a way of doing this, but I cannot found out... > > By the way, Large Montage still doesn-t work... plugin not found when I run it. Even though I have all the files that I need ! I might have done something wrong, but i don-t know what ! I run imageJ bundled with Java. > > Any suggestions ? > > many thanks > > france > |
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