Stitching plugin - "fuse and display" broken

[Daniel Matthews]

Hi

I have just updated Fiji and found that the "Fuse and display" option in the Grid Stitching plugin is broken. If I turn off the ImageJ2 options every thing is fine.

The first part of the exception is as follows:

(Fiji Is Just) ImageJ 2.0.0-rc-25/1.49m; Java 1.6.0_31 [64-bit]; Mac OS X 10.7.5; 546MB of 3509MB (15%)
 
java.lang.NullPointerException
        at net.imagej.legacy.translate.AbstractDisplayCreator.getDataset(AbstractDisplayCreator.java:76)
        at net.imagej.legacy.translate.GrayDisplayCreator.grayCase(GrayDisplayCreator.java:159)
        at net.imagej.legacy.translate.GrayDisplayCreator.makeDisplay(GrayDisplayCreator.java:129)
        at net.imagej.legacy.translate.AbstractDisplayCreator.createDisplay(AbstractDisplayCreator.java:63)
        at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:100)
        at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:84)
        at net.imagej.legacy.LegacyImageMap.registerLegacyImage(LegacyImageMap.java:271)
        at net.imagej.legacy.DefaultLegacyHooks.registerImage(DefaultLegacyHooks.java:177)

Cheers,

Dan.

[ctrueden]

Hi Dan,

> I have just updated Fiji and found that the "Fuse and display" option
> in the Grid Stitching plugin is broken. If I turn off the ImageJ2
> options every thing is fine.

Thank you for the report. Similar bugs were reported several times over the
weekend [1, 2, 3, 4], and a fix has been uploaded. Run Help > Update... to
receive it.

Please note that it is also recommended to disable the "Enable ImageJ2 data
structures" option in Edit > Options > ImageJ2, since this feature is still
buggy and causes performance problems. ImageJ2 and Fiji will still work
fine (better, actually) with that option off. For those interested in
technical details, the relevant issues are [5] and [6].

Regards,
Curtis

[1] http://fiji.sc/bugzilla/show_bug.cgi?id=1010
[2] http://fiji.sc/bugzilla/show_bug.cgi?id=1011
[3] http://fiji.sc/bugzilla/show_bug.cgi?id=1014
[4] http://fiji.sc/bugzilla/show_bug.cgi?id=1015
[5] https://github.com/imagej/imagej-legacy/issues/86
[6] https://github.com/imagej/imagej-legacy/issues/105

On Sun, Mar 1, 2015 at 7:02 PM, Daniel Matthews <[hidden email]>
wrote:

> Hi
>
> I have just updated Fiji and found that the "Fuse and display" option in
> the
> Grid Stitching plugin is broken. If I turn off the ImageJ2 options every
> thing is fine.
>
> The first part of the exception is as follows:
>
> (Fiji Is Just) ImageJ 2.0.0-rc-25/1.49m; Java 1.6.0_31 [64-bit]; Mac OS X
> 10.7.5; 546MB of 3509MB (15%)
>
> java.lang.NullPointerException
>         at
>
> net.imagej.legacy.translate.AbstractDisplayCreator.getDataset(AbstractDisplayCreator.java:76)
>         at
>
> net.imagej.legacy.translate.GrayDisplayCreator.grayCase(GrayDisplayCreator.java:159)
>         at
>
> net.imagej.legacy.translate.GrayDisplayCreator.makeDisplay(GrayDisplayCreator.java:129)
>         at
>
> net.imagej.legacy.translate.AbstractDisplayCreator.createDisplay(AbstractDisplayCreator.java:63)
>         at
>
> net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:100)
>         at
>
> net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:84)
>         at
>
> net.imagej.legacy.LegacyImageMap.registerLegacyImage(LegacyImageMap.java:271)
>         at
>
> net.imagej.legacy.DefaultLegacyHooks.registerImage(DefaultLegacyHooks.java:177)
>
> Cheers,
>
> Dan.
>
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Stitching-plugin-fuse-and-display-broken-tp5011819.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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