Dear list,
When running the Stress granule counter plugin (
http://rsb.info.nih.gov/ij/plugins/stress_granule_counter/index.html) I get the following error:
ImageJ 1.50e; Java 1.8.0_60 [64-bit]; Windows 7 6.1; 82MB of 12231MB (<1%)
java.lang.NullPointerException
at SG_counter.run(SG_counter.java:124)
at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:263)
at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:112)
at ij.IJ.runUserPlugIn(IJ.java:214)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:136)
at ij.Executer.run(Executer.java:65)
at java.lang.Thread.run(Unknown Source)
As far as I can see it does not matter if I run Java 1.6 or 1.8, ImageJ or Fiji.
You can easily reproduce the error by opening hela-cells.tif, select all (Ctrl-A) and run the plugin. It produces 2 images before the error occurs.
Any suggestions?
Best wishes
Kees
Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif--
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http://imagej.nih.gov/ij/list.html
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