Trackmate_EdgeAngle feature

[pduw]

Dear All,  I am using Trackmate. And it works very beautifully for my
samples. However,  I need to calculate the angle of different tracks.
I got the following tutorial from Fiji.
http://fiji.sc/How_to_write_your_own_edge_feature_analyzer_algorithm_for_TrackMate

Here is what I did:
1) Using Jcreator, I created a new project. (using following setting;
Basic Java Application; Classpath: JDK version 1.8; Required
libraries: ImageJ- Compiler: Default)
2) Then I pasted EdgeAngle module from the Github link given in  how
to tutorial.
3) Then I created a Jar file from it and moved it to plugins folders
with TrackMate jar file.

Still I don't get the EdgeAngle data from the tracks.

Please let me what I am doing wrong here.

One more question - Can I give custom color to the tracks and increase
or decrease the width of the tracks lines.

Thanks a lot in advance.

regards

Pankaj

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[Jean-Yves Tinevez]

Hi Pankaj,
So I have seen your mail and your YouTube comments.
I have checked that the examples you mention compile and work as expected.
I suggest you to try this jar:
http://dl.pasteur.fr/fop/sDdNuDSQ/TrackMate_examples-1.0.3-SNAPSHOT.jar
it works for me™.
Best
jy

[Pankaj Dubey-2]

Hi Jean,
Thanks a ton! This works very nicely. At last, I got the edge angle
data now. I will try to figure out why it didn't when I tried to
compile it.

One more question I had- is there any way to change the color of
tracks (say from blue to magenta or something)  and increase or
decrease width of the track lines?

Many thanks

regards
Pankaj
--
Pankaj Dubey
Research Scholar
Prof.Krishanu Ray's lab
Department of Biological Sciences
Tata Institute of Fundamental Research,
Homi Bhaba Road,
Mumbai-05, India.
Ph- 022 2278 2731


On Wed, Feb 11, 2015 at 6:41 PM, Jean-Yves Tinevez <[hidden email]> wrote:

> Hi Pankaj,
> So I have seen your mail and your YouTube comments.
> I have checked that the examples you mention compile and work as expected.
> I suggest you to try this jar:
> http://dl.pasteur.fr/fop/sDdNuDSQ/TrackMate_examples-1.0.3-SNAPSHOT.jar
> it works for me™.
> Best
> jy
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.com/Trackmate-EdgeAngle-feature-tp5011559p5011564.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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