TrakEM2 automatic segmentation

Previous Topic Next Topic
 
classic Classic list List threaded Threaded
1 message Options
Art
Reply | Threaded
Open this post in threaded view
|

TrakEM2 automatic segmentation

Art
Hi,

I am trying to build 3D model for vessel branching using sequential sections and TrakEM2.

So I have, for example 50 images. It could be 200 vessels per section. I can make them "binary" to highlight vessels.

The problem is, that I still have to "segment" each vessel on each image manually in TrakEM2.
I am looking for solution, how to make such segmentation really automatic.

Thank you in advance,
Artur