TrakEM2 connectivity matrix

[Nadine Randel]

Dear all,
I use Fiji/TrakEM2 for neuronal reconstruction. There are two problems which occur with areatrees and connectors. First: Both sometimes are not visible on the display, partly and also randomly.
Second if I export the connectivity matrix there are also areatrees and connectors (with pre and postsynaptic aim) are missing. But there is no error message.

Thanks in advance for the help

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Albert Cardona-2]

2013/8/1 Nadine Randel <[hidden email]>

> Dear all,
> I use Fiji/TrakEM2 for neuronal reconstruction. There are two problems
> which occur with areatrees and connectors. First: Both sometimes are not
> visible on the display, partly and also randomly.
>


This error is related to what object is selected, and it is a visualization
error only. Annoying as it is, the error has proven hard to fix over
time--I've known of this error for 2 years now. Appears only in some
computers.



> Second if I export the connectivity matrix there are also areatrees and
> connectors (with pre and postsynaptic aim) are missing. But there is no
> error message.
>



This potential error is new to me. Have you made sure that the radii of the
connectors enclose the target areatree nodes, as explained here:
http://www.ini.uzh.ch/~acardona/trakem2_manual.html#connectors

Albert

--
http://albert.rierol.net
http://www.ini.uzh.ch/~acardona/

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html