TrakEm2 Problems

[OliverB]

Hi

We are using TrakEm2 to reconstruct 3D images of olfactory glomeruli from in vivo imaging data. We discovered a possible bug; whenever we save a project as XML file, the program disconnects the first and last points along 'profile lines' that we use to draw the outline of our tissue. When we re-open the project all profile lines are interrupted along a fairly straight line (see crack in attached image).

We are also wondering if anyone known of an easy way to fill or 'cap' profiles so that they don't look like empty barrels in 3D projections (see holes in attached image)?

Any advice would be greatly appreciated.

[Albert Cardona-2]

2013/3/7 OliverB <[hidden email]>

> Hi
>
> We are using TrakEm2 to reconstruct 3D images of olfactory glomeruli from
> in
> vivo imaging data. We discovered a possible bug; whenever we save a project
> as XML file, the program disconnects the first and last points along
> 'profile lines' that we use to draw the outline of our tissue. When we
> re-open the project all profile lines are interrupted along a fairly
> straight line (see crack in attached image).
>
> We are also wondering if anyone known of an easy way to fill or 'cap'
> profiles so that they don't look like empty barrels in 3D projections (see
> holes in attached image)?
>
> Any advice would be greatly appreciated.
>
> <http://imagej.1557.n6.nabble.com/file/n5002047/FIJI_Issues_%231.jpg>
>
>
>

... [show rest of quote]

Hi Oliver,

will try to look at it as soon as I can. Give me a few days.

Would be nice as well if you file this as a bug in the Fiji bug tracker:
http://fiji.sc/wiki/index.php/Report_a_Bug

Best,

Albert


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http://www.ini.uzh.ch/~acardona/

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