UnwarpJ apply to image stack >2 pictures

[carina_ib]

Hey,

I produce image stacks of 100 to 200 images. The images all need to be adapted to the image at the position first. Is there any possibility to apply UnwarpJ to more than 2 images simultanously, while using the same target image for all source images?

Cheers
Carina

[Joel Sheffield]

Could StackReg (q.v.) work for this?  It can do rigid body and affine
adjustments.

Joel



Joel B. Sheffield, Ph.D
Department of Biology
Temple University
Philadelphia, PA 19122
Voice: 215 204 8839
e-mail: [hidden email]
URL:  *http://tinyurl.com/khbouft <http://tinyurl.com/khbouft>*

On Fri, Apr 24, 2015 at 9:14 AM, carina_ib <[hidden email]> wrote:

> Hey,
>
> I produce image stacks of 100 to 200 images. The images all need to be
> adapted to the image at the position first. Is there any possibility to
> apply UnwarpJ to more than 2 images simultanously, while using the same
> target image for all source images?
>
> Cheers
> Carina
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/UnwarpJ-apply-to-image-stack-2-pictures-tp5012594.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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[Ignacio Arganda-Carreras-2]

Hello Carina,

Yes, you can do that. Just register the first slice of the two stacks, save
the transforms and apply them the save transforms to all other slices
within a macro.

Let me know if you need help with that.

ignacio

On Fri, Apr 24, 2015 at 4:20 PM, JOEL B. SHEFFIELD <[hidden email]> wrote:

> Could StackReg (q.v.) work for this?  It can do rigid body and affine
> adjustments.
>
> Joel
>
>
>
> Joel B. Sheffield, Ph.D
> Department of Biology
> Temple University
> Philadelphia, PA 19122
> Voice: 215 204 8839
> e-mail: [hidden email]
> URL:  *http://tinyurl.com/khbouft <http://tinyurl.com/khbouft>*
>
> On Fri, Apr 24, 2015 at 9:14 AM, carina_ib <[hidden email]> wrote:
>
> > Hey,
> >
> > I produce image stacks of 100 to 200 images. The images all need to be
> > adapted to the image at the position first. Is there any possibility to
> > apply UnwarpJ to more than 2 images simultanously, while using the same
> > target image for all source images?
> >
> > Cheers
> > Carina
> >
> >
> >
> > --
> > View this message in context:
> >
> http://imagej.1557.x6.nabble.com/UnwarpJ-apply-to-image-stack-2-pictures-tp5012594.html
> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
Ignacio Arganda-Carreras, Ph.D.
Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
Bâtiment 2
INRA Centre de Versailles-Grignon
Route de St-Cyr (RD10)
78026 Versailles Cedex France

Tel : [phone] - fax : [phone]
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

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