Validation

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Validation

Konstantin von Martius
Dear Image J subscribers,
we are monitoring a clinical study where Image J software is used to
determine the % of specifically stained area in pictures of  tissue
cuts. Software used in clinical studies should be validated. Is there a
validation report  or other proof of performance available for the Image
J software.
Any help is extremely welcome.
Thank you and best regards

--
Dr.Konstantin von Martius
Quintiles Consulting
Zuccalistr. 19
80639 München
Tel: +49 89 176782
Fax: +49 89 176773
Email: [hidden email]

***************************************************************************************
Quintiles GmbH, Hugenottenallee 167,D-63263 Neu-Isenburg, Deutschland
Geschäftsführer: Dr. Ludger Beckmann, Michael Wilson
Registergericht: Offenbach/M., GmbH, HRB 7983

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Re: Validation

Robert Dougherty
Dear Dr. von Martius,

You might check the archives https://list.nih.gov/archives/imagej.html.
Search terms "certification" and "validation" produce several (overlapping)
hits.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone (425) 990-5912
Fax (425) 467-1119
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Konstantin von Martius
> Sent: Wednesday, February 13, 2008 6:59 AM
> To: [hidden email]
> Subject: Validation
>
> Dear Image J subscribers,
> we are monitoring a clinical study where Image J software is used to
> determine the % of specifically stained area in pictures of  tissue
> cuts. Software used in clinical studies should be validated. Is there a
> validation report  or other proof of performance available for the Image
> J software.
> Any help is extremely welcome.
> Thank you and best regards
>
> --
> Dr.Konstantin von Martius
> Quintiles Consulting
> Zuccalistr. 19
> 80639 München
> Tel: +49 89 176782
> Fax: +49 89 176773
> Email: [hidden email]
>
> **************************************************************************
> *************
> Quintiles GmbH, Hugenottenallee 167,D-63263 Neu-Isenburg, Deutschland
> Geschäftsführer: Dr. Ludger Beckmann, Michael Wilson
> Registergericht: Offenbach/M., GmbH, HRB 7983
>
> **************************************************************************
> *************
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Re: Validation

Sami Badawi-2
In reply to this post by Konstantin von Martius
Konstantin,

The part of the software industry that need reliable results, e.g. finance,
is moving towards extensive use of unit tests, and often test driven
development.

You don't add new code without new unit tests and you don't check in code
without running all unit tests.

In my little ImageJ project ShapeLogic, I currently have 320 unit tests.

It takes a lot of work to add unit tests, but yo get
* Reliability
* Speed of making changes and bug fixes
* Ability to refactor code easily
* Unit tests serves as documentation of codes intentions

I could not imagine working without it anymore.

The code that is not dependent of ImageJ is tested isolated, that is simpler
and faster.

This is how I test the plugins that I have written in ImageJ.

public ByteProcessor runPluginFilterOnImage(String fileName, PlugInFilter
plugInFilter) {
        Opener opener = new Opener();
        ImagePlus image = opener.openImage(fileName);
        ByteProcessor bp = (ByteProcessor) image.getProcessor();
        plugInFilter.setup("", image);
        plugInFilter.run(bp);
        return bp;
}

During development or debugging I run individual unit tests from Eclipse.
When I am checking code into Subversion I run all test from command line
using Maven 2:
mvn test

Hope this is helpful,
-Sami Badawi
http://www.shapelogic.org
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Re: Validation

Dimiter Prodanov-2
In reply to this post by Konstantin von Martius
Dear Konstantin,

IJ is used in numerous scientific publications. You can try searching in
PubMed with a keyword "ImageJ".
Hope that this helps,

Dimiter Prodanov