Hi Colin,
> 1. Is there an ICS or ICS2 file exporter from ImageJ. I have the .ics
> opener plugin but cannot save the files.
I am not aware of any exporter plugins for ICS.
> 2. I can open OME XML and TIFF files but cannot save in this format. I
> have the LOCI bioformats plugin but cannot write the output.
To save as OME-TIFF, use the Bio-Formats Exporter plugin with
extension ".ome.tif" (sorry this is not documented anywhere yet).
Unfortunately, there are currently bugs in the OME-TIFF export in some
cases. I am in the process of cleaning up the Bio-Formats OME-XML
metadata infrastructure and upgrading things to the new 2007 version
of the OME-XML schema. There should be a release of Bio-Formats soon
containing these improvements and bugfixes. My goal is for Bio-Formats
to provide rock solid conversion into the most recent OME-TIFF format
before the end of the year.
Lastly, Bio-Formats does not yet have the ability to write as OME-XML,
but will be able to do so in the future.
-Curtis
On Dec 4, 2007 8:32 AM, Colin Rickman <
[hidden email]> wrote:
> Hi,
>
> I have a couple of file output problems from ImageJ:
>
> 1. Is there an ICS or ICS2 file exporter from ImageJ. I have the .ics
> opener plugin but cannot save the files.
>
> 2. I can open OME XML and TIFF files but cannot save in this format. I
> have the LOCI bioformats plugin but cannot write the output.
>
> Any help gratefully received.
>
> Colin
>
> --
>
> Dr Colin Rickman
> Centre for Integrative Physiology
> School of Biomedical Sciences
> University of Edinburgh
> Hugh Robson Building
> George Square
> Edinburgh
> EH8 9XD
>
> Tel: 0131 (6)511512
> Fax: 0131 (6)503128
>
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