aligns a stack of images taking the first image as reference

[Wei Shen-2]

Dear all,

 

Would you tell me a method which I could align a stack of images taking the
first image (or other pictures) as reference?

Thanks

 

Wei

[Robert Kirmse]

  Hi
I am using Stackreg
http://bigwww.epfl.ch/thevenaz/stackreg/

It works very nice

Cheers
Robert

On 04/08/2011 01:48 PM, wshen824 wrote:

> Dear all,
>
>
>
> Would you tell me a method which I could align a stack of images taking the
> first image (or other pictures) as reference?
>
> Thanks
>
>
>
> Wei

[Ignacio Arganda-Carreras]

What kind of transformation do you expect between sections?

In Fiji you also have several options:

http://pacific.mpi-cbg.de/wiki/index.php/Register_Virtual_Stack_Slices

http://pacific.mpi-cbg.de/wiki/index.php/Elastic_Alignment_and_Montage

ignacio

On Fri, Apr 8, 2011 at 6:42 PM, Robert Kirmse <[hidden email]>wrote:

>  Hi
> I am using Stackreg
> http://bigwww.epfl.ch/thevenaz/stackreg/
>
> It works very nice
>
> Cheers
> Robert
>
>
> On 04/08/2011 01:48 PM, wshen824 wrote:
>
>> Dear all,
>>
>>
>>
>> Would you tell me a method which I could align a stack of images taking
>> the
>> first image (or other pictures) as reference?
>>
>> Thanks
>>
>>
>>
>> Wei
>>
>

--
Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA

Phone: [phone]
Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html