Detected Fiji
Available RAM: 5271MB, using 3/4 of that: 3954MB
JRE not found in '/home/baecker/programs/Fiji.app/jre'
JAVA_HOME contains a JRE: '/home/baecker/programs/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre'
Re-executing with correct library lookup path (/home/baecker/programs/Fiji.app/lib/linux64:/home/baecker/programs/Fiji.app/mm/linux64)
Detected Fiji
Available RAM: 5271MB, using 3/4 of that: 3954MB
JRE not found in '/home/baecker/programs/Fiji.app/jre'
JAVA_HOME contains a JRE: '/home/baecker/programs/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre'
Using JAVA_HOME /home/baecker/programs/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
Opening Java library /home/baecker/programs/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre/lib/amd64/server/libjvm.so
java -Dpython.cachedir.skip=true -Dplugins.dir=/home/baecker/programs/Fiji.app -Xmx3954m -Xincgc -XX:PermSize=128m -Dsun.java.command=ImageJ -Djava.class.path=/home/baecker/programs/Fiji.app/jars/imagej-launcher-3.0.2.jar -Dimagej.dir=/home/baecker/programs/Fiji.app -Dij.dir=/home/baecker/programs/Fiji.app -Dfiji.dir=/home/baecker/programs/Fiji.app -Dfiji.defaultLibPath=lib/amd64/server/libjvm.so -Dfiji.executable=./debug -Dij.executable=./debug -Djava.library.path=/home/baecker/programs/Fiji.app/lib/linux64:/home/baecker/programs/Fiji.app/mm/linux64 -Dij.debug=true -Dscijava.log.level=debug net.imagej.launcher.ClassLauncher -classpath /home/baecker/programs/Fiji.app/jars/ij-1.49a.jar fiji.Main -port7
Adding option: -Djava.home=/home/baecker/programs/Fiji.app/java/linux-amd64/jdk1.6.0_24/
Launching main class fiji.Main with parameters [-port7]
Class loader = sun.misc.Launcher$AppClassLoader@b92d342
Checking class loader: ij.io.PluginClassLoader@2ee391c4
Checking URL: file:/home/baecker/programs/Fiji.app/jars/imglib2-realtransform-2.0.0-beta-25.jar
Not Eclipse because first entry is: file:/home/baecker/programs/Fiji.app/jars/imglib2-realtransform-2.0.0-beta-25.jar
[DEBUG] Creating service: org.scijava.event.DefaultEventService
[DEBUG] Creating service: org.scijava.log.StderrLogService
[DEBUG] Created service 'org.scijava.log.StderrLogService' in 0 ms
[DEBUG] Creating service: org.scijava.thread.DefaultThreadService
[DEBUG] Created service 'org.scijava.thread.DefaultThreadService' in 0 ms
[DEBUG] Created service 'org.scijava.event.DefaultEventService' in 24 ms
[DEBUG] Creating service: org.scijava.script.DefaultScriptService
[DEBUG] Creating service: org.scijava.plugin.DefaultPluginService
[INFO] Found 666 plugins.
[DEBUG] - class='org.scijava.module.process.DebugPreprocessor', priority=Infinity, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.module.process.DebugPostprocessor', priority=Infinity, enabled=true, pluginType=PostprocessorPlugin
[DEBUG] - class='net.imagej.plugins.tools.KonamiHandler', name='Konami', priority=Infinity, enabled=true, pluginType=Tool
[DEBUG] - class='org.scijava.event.DefaultEventService', priority=100000.0, enabled=true, pluginType=Service
[DEBUG] - class='org.scijava.module.process.ValidityPreprocessor', priority=10001.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.ui.UIPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.display.ActiveDisplayPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.module.process.GatewayPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.module.process.ServicePreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='net.imagej.display.ActiveImagePreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='io.scif.bf.BioFormatsFormat', priority=10000.0, enabled=true, pluginType=Format
[DEBUG] - class='net.imagej.ops.slicer.SlicewiseRAI2RAI', name='slicemapper', priority=10000.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayDoubleImageP', name='add', priority=111.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayByteImageP', name='add', priority=110.0, enabled=true, pluginType=Op
[DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMETIFFtoOMETranslator', priority=101.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMEtoOMETIFFTranslator', priority=101.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='net.imagej.app.ToplevelImageJApp', name='ImageJ', priority=101.0, enabled=true, pluginType=App
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayDoubleImage', name='add', priority=101.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.module.process.InitPreprocessor', priority=100.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.script.DefaultScriptService', priority=100.0, enabled=true, pluginType=Service
[DEBUG] - class='net.imagej.lut.DefaultLUTService', priority=100.0, enabled=true, pluginType=Service
[DEBUG] - class='org.scijava.ui.awt.widget.AWTMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget
[DEBUG] - class='org.scijava.ui.swing.widget.SwingMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget
[DEBUG] - class='net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='io.scif.ome.translators.APNGTranslator$APNGOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.APNGTranslator$OMEAPNGTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.BMPTranslator$BMPOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.DICOMTranslator$DICOMOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.EPSTranslator$OMEEPSTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.ICSTranslator$ICSOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.ICSTranslator$OMEICSTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.MicromanagerTranslator$MicromanagerOMETranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.NRRDTranslator$NRRDOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.OBFTranslator$OBFOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='io.scif.ome.translators.TIFFTranslator$OMETIFFTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator
[DEBUG] - class='io.scif.ome.translators.TIFFTranslator$TIFFOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator
[DEBUG] - class='net.imagej.operator.OpAdd', name='Add', priority=100.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.app.ImageJApp', name='ImageJ', priority=100.0, enabled=true, pluginType=App
[DEBUG] - class='net.imagej.ui.swing.tools.SwingRectangleTool', name='Rectangle', description='Rectangular overlays', iconPath='/icons/tools/rectangle.png', priority=100.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayByteImage', name='add', priority=100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$AddOp', name='add', priority=100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$DivideOp', name='divide', priority=100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$MultiplyOp', name='multiply', priority=100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$SubtractOp', name='subtract', priority=100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter', priority=99.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.ui.swing.tools.SwingEllipseTool', name='Oval', description='Oval selections', iconPath='/icons/tools/oval.png', priority=99.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.operator.OpSubtract', name='Subtract', priority=99.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter', priority=98.5, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter', priority=98.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.operator.OpMultiply', name='Multiply', priority=98.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.ui.swing.tools.SwingPolygonTool', name='Polygon', description='Polygon overlays', iconPath='/icons/tools/polygon.png', priority=98.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ui.swing.overlay.LineJHotDrawAdapter', priority=97.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.operator.OpDivide', name='Divide', priority=97.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.ui.swing.tools.SwingLineTool', name='Line', description='Straight line overlays', iconPath='/icons/tools/line.png', priority=97.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter', priority=96.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.operator.OpAnd', name='AND', priority=96.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.ui.swing.tools.SwingPolylineTool', name='Polyline', description='Polyline overlays', iconPath='/icons/tools/polyline.png', priority=96.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ui.swing.overlay.AngleJHotDrawAdapter', priority=95.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.ui.swing.tools.SwingAngleTool', name='Angle', description='Angle overlays', iconPath='/icons/tools/angle.png', priority=95.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.operator.OpOr', name='OR', priority=95.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.ui.swing.overlay.PointJHotDrawOverlay', priority=94.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='net.imagej.ui.swing.tools.SwingPointTool', name='Point', description='Point overlays', iconPath='/icons/tools/point.png', priority=94.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.operator.OpXor', name='XOR', priority=94.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpMin', name='Min', priority=93.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpMax', name='Max', priority=92.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpAverage', name='Average', priority=91.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpDifference', name='Difference', priority=90.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpCopy', name='Copy', priority=89.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='net.imagej.operator.OpTransparentZero', name='Transparent-zero', priority=88.0, enabled=true, pluginType=CalculatorOp
[DEBUG] - class='org.scijava.ui.swing.widget.SwingChoiceRadioWidget', priority=1.0, enabled=true, pluginType=InputWidget
[DEBUG] - class='net.imagej.ops.onthefly.JavassistOptimizer', priority=1.0, enabled=true, pluginType=Optimizer
[DEBUG] - class='fiji.plugin.trackmate.visualization.threedviewer.SpotDisplayer3DFactory', priority=1.0, enabled=true, pluginType=ViewFactory
[DEBUG] - class='fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzerFactory', priority=1.0, enabled=true, pluginType=SpotAnalyzerFactory
[DEBUG] - class='net.imagej.ops.generated.AddConstantToDouble', name='add', priority=0.6, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.generated.AddConstantToLong', name='add', priority=0.5, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.generated.AddConstantToFloat', name='add', priority=0.4, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.generated.AddConstantToInteger', name='add', priority=0.3, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.generated.AddConstantToShort', name='add', priority=0.2, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.generated.AddConstantToByte', name='add', priority=0.1, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.plugins.commands.assign.AndDataValuesWith', menu='Process > Math > AND...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.app.AboutImageJ', label='About ImageJ...', menu='Help > About ImageJ...', iconPath='/icons/commands/information.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.AbsDataValues', menu='Process > Math > Abs...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian', menu='Process > Noise > Noise Reduction > Adaptive Median', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.restructure.AddAxis', menu='Image > Axes > Add Axis...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.restructure.AddData', menu='Image > Data > Add Data...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.overlay.AddImage', menu='Image > Overlay > Add Image', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.AddNoiseToDataValues', menu='Process > Noise > Add Noise...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues', menu='Process > Noise > Add Specified Noise...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.AddToDataValues', menu='Process > Math > Add...', iconPath='/icons/commands/sum.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean', menu='Process > Noise > Noise Reduction > Alpha Trimmed Mean', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.animation.AnimationOptions', menu='Image > Animation > Animation Options...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsAppearance', menu='Edit > Options > Appearance...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.ops.commands.threshold.GlobalThresholder', menu='Image > Threshold > Apply Threshold', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsArrowTool', menu='Edit > Options > Arrow Tool...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.display.AutoContrast', menu='Image > Adjust > Auto-Contrast', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.axispos.AxisPositionBackward', menu='Image > Axes > Axis Position Backward', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.axispos.AxisPositionForward', menu='Image > Axes > Axis Position Forward', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.misc.Benchmark', menu='Plugins > Utilities > Benchmark', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.imglib.Binner', menu='Image > Transform > Bin...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.binary.Binarize', menu='Process > Binary > Binarize...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.interactive.BrightnessContrast', menu='Image > Adjust > Brightness/Contrast...', iconPath='/icons/commands/contrast.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.debug.ButtonDemo', menu='Plugins > Sandbox > Button Demo', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.CaptureImage', menu='Plugins > Utilities > Capture Image', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.CaptureScreen', menu='Plugins > Utilities > Capture Screen', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.typechange.TypeChanger', menu='Image > Type > Change...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.ChannelsTool', menu='Image > Color > Channels Tool...', iconPath='/icons/commands/color_wheel.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsChannels', menu='Edit > Options > Channels...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='org.scijava.plugins.commands.io.ClearRecent', label='Clear Recent', menu='File > Open Recent > Clear List', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.binary.CloseBinaryImage', menu='Process > Binary > Close', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.plugins.commands.display.Close', menu='File > Close', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.plugins.commands.display.CloseAll', menu='File > Close All', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsCompatibility', menu='Edit > Options > Compatibility...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.options.OptionsCompiler', menu='Edit > Options > Compiler...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean', menu='Process > Noise > Noise Reduction > Contraharmonic Mean', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsConversions', menu='Edit > Options > Conversions...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.ops.commands.convert.ConvertImgPlus', menu='Image > Convert', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.ops.commands.convolve.Convolve', menu='Image > Convolve', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.app.CopyToSystem', menu='Edit > Copy To System', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.binary.CreateMask', menu='Process > Binary > Create Mask...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.app.CreateShortcut', menu='Plugins > Shortcuts > Create Shortcut...', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.imglib.CropImage', menu='Image > Crop', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsDicom', menu='Edit > Options > DICOM...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.options.OptionsOverlay', label='Default Overlay Settings', menu='Image > Overlay > Overlay Options...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.restructure.DeleteAxis', menu='Image > Axes > Delete Axis...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.restructure.DeleteData', menu='Image > Data > Delete Data...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.interactive.DeleteThreshold', menu='Image > Adjust > Delete Threshold', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.DeselectOverlays', menu='Edit > Selection > Deselect Overlays', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.ui.swing.commands.DialogPromptDemo', menu='Plugins > Sandbox > Dialog Prompt Demo', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.binary.DilateBinaryImage', menu='Process > Binary > Dilate', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.DivideDataValuesBy', menu='Process > Math > Divide...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.plugins.commands.debug.DumpStack', menu='Plugins > Debug > Dump Stack', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.imglib.DuplicateImage', menu='Image > Duplicate', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.imglib.DuplicateImageContext', menu='Duplicate...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.correlate.ShadowsEast', menu='Process > Shadows > East', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.restructure.EditAxes', menu='Image > Axes > Edit Axes...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.EquationDataValues', menu='Process > Math > Equation...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.binary.ErodeBinaryImage', menu='Process > Binary > Erode', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.ExpDataValues', menu='Process > Math > Exp...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.FillDataValues', menu='Edit > Fill', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.ui.swing.commands.CommandFinder', menu='Plugins > Utilities > Find Commands...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.neigh.FindEdges', menu='Process > Find Edges', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.Flatten', menu='Image > Overlay > Flatten', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.restructure.FlipAxis', menu='Image > Transform > Flip Axis', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.rotate.FlipHorizontally', menu='Image > Transform > Flip Horizontally', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.rotate.FlipVertically', menu='Image > Transform > Flip Vertically', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.tools.FloodFillToolConfig', label='Flood Fill Tool', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsFont', menu='Edit > Options > Fonts...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.overlay.FromOverlayManager', menu='Image > Overlay > From Overlay Manager', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.GammaDataValues', menu='Process > Math > Gamma...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.imglib.GaussianBlur', menu='Process > Filters > Gaussian Blur...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean', menu='Process > Noise > Noise Reduction > Geometric Mean', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean', menu='Process > Noise > Noise Reduction > Harmonic Mean', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.display.HistogramPlot', menu='Analyze > Histogram Plot', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.calculator.ImageCalculator', menu='Process > Image Calculator...', iconPath='/icons/commands/calculator.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.app.ImageJWebsite', menu='Help > ImageJ Website...', iconPath='/icons/commands/world_link.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsInputOutput', menu='Edit > Options > Input/Output...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.debug.InspectImg', menu='Plugins > Debug > Inspect Image', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.ui.swing.commands.InspectObjects', menu='Plugins > Debug > Inspect Objects', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='org.scijava.plugins.commands.debug.InvalidCommandDemo$InvalidCommand', menu='Plugins > Debug > Invalid Command', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.InvertDataValues', menu='Edit > Invert...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.lut.LUTSelector', label='LUT Selector', menu='Image > Lookup Tables > Select...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.overlay.OverlayLabels', menu='Image > Overlay > Labels...', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.options.OptionsLineWidth', menu='Edit > Options > Line Width...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.app.ListShortcuts', menu='Plugins > Shortcuts > List Shortcuts...', priority=0.0, enabled=true, pluginType=Command
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[DEBUG] - class='org.scijava.ui.swing.options.OptionsLookAndFeel', menu='Edit > Options > Look and Feel...', priority=0.0, enabled=true, pluginType=OptionsPlugin
[DEBUG] - class='net.imagej.plugins.commands.binary.MakeBinary', menu='Process > Binary > Make Binary...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.overlay.ConvertToMask', menu='Process > Binary > Make Mask Overlay...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.debug.MandelbrotSetImage', menu='Plugins > Sandbox > Mandelbrot Set', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.MaxDataValues', menu='Process > Math > Max...', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax', menu='Process > Noise > Noise Reduction > Maximum', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean', menu='Process > Noise > Noise Reduction > Mean', priority=0.0, enabled=true, pluginType=Command
[DEBUG] - class='net.imagej.plugins.commands.debug.MeasurementDemo', menu='Plugins > Sandbox > Measurement Demo', priority=0.0, enabled=true, pluginType=Command
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[DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint', menu='Process > Noise > Noise Reduction > Midpoint', priority=0.0, enabled=true, pluginType=Command
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[DEBUG] - class='net.imagej.types.DefaultDataTypeService', priority=0.0, enabled=true, pluginType=Service
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[DEBUG] - class='org.scijava.plugins.platforms.windows.WindowsPlatform', name='Windows', priority=0.0, enabled=true, pluginType=Platform
[DEBUG] - class='net.imagej.threshold.YenThresholdMethod', name='Yen', priority=0.0, enabled=true, pluginType=ThresholdMethod
[DEBUG] - class='net.imagej.plugins.tools.ZoomHandler', name='Zoom Shortcuts', priority=0.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToImageInPlace', name='add', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToPlanarDoubleImage', name='add', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddRandomAccessibleIntervalToIterableInterval', name='add', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.ascii.DefaultASCII', name='ascii', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.chunker.DefaultChunker', name='chunker', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convert.ConvertII', name='convert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convert.ConvertPixClip', name='convert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convert.ConvertPixCopy', name='convert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convert.ConvertPixNormalizeScale', name='convert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convert.ConvertPixScale', name='convert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convolve.ConvolveFourier', name='convolve', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.convolve.ConvolveNaive', name='convolve', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.create.CreateArrayImg', name='create', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.equation.DefaultEquation', name='equation', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.gauss.GaussRAI2RAI', name='gauss', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.identity.DefaultIdentity', name='identity', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.invert.InvertII', name='invert', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinFunctionAndFunction', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinFunctionAndInplace', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinFunctions', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinInplaceAndFunction', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinInplaceAndInplace', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.join.DefaultJoinInplaceFunctions', name='join', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.lookup.DefaultLookup', name='lookup', aliases='op', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.loop.DefaultLoopFunction', name='loop', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.loop.DefaultLoopInplace', name='loop', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.threshold.Manual', name='manualthreshold', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapII2View', name='map', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapRA2View', name='map', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapRAI2View', name='map', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.misc.MinMaxRealType', name='minmax', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.moments.Moment1AboutMean', name='moment1aboutmean', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.moments.Moment2AboutMean', name='moment1aboutmean', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.normalize.NormalizeII', name='normalize', aliases='norm', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.normalize.NormalizeRealType', name='normalize', aliases='norm', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.threshold.Otsu', name='otsu', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.scale.ScaleImg', name='scale', aliases='norm', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.ui.swing.sdi.SwingSDIUI', name='swing', priority=0.0, enabled=true, pluginType=UserInterface
[DEBUG] - class='net.imagej.ops.threshold.GlobalThreshold', name='threshold', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.threshold.LocalThreshold', name='threshold', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.threshold.PixThreshold', name='threshold', priority=0.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.ParallelMap', name='map', priority=-95.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.ParallelMapI2I', name='map', priority=-97.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.ParallelMapI2R', name='map', priority=-98.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.crop.CropImgPlus', name='crop', aliases='slice', priority=-99.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.crop.CropLabeling', name='crop', aliases='slice', priority=-99.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapII2II', name='map', priority=-99.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.project.parallel.DefaultProjectP', name='project', priority=-99.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.ui.dnd.FileDragAndDropHandler', priority=-100.0, enabled=true, pluginType=DragAndDropHandler
[DEBUG] - class='org.scijava.display.DefaultTextDisplay', priority=-100.0, enabled=true, pluginType=Display
[DEBUG] - class='org.scijava.log.StderrLogService', priority=-100.0, enabled=true, pluginType=Service
[DEBUG] - class='org.scijava.platform.DefaultAppEventService', priority=-100.0, enabled=true, pluginType=Service
[DEBUG] - class='net.imagej.io.DatasetIOPlugin', priority=-100.0, enabled=true, pluginType=IOPlugin
[DEBUG] - class='net.imagej.render.DummyRenderingService', priority=-100.0, enabled=true, pluginType=Service
[DEBUG] - class='net.imagej.display.DummyScreenCaptureService', priority=-100.0, enabled=true, pluginType=Service
[DEBUG] - class='net.imagej.legacy.plugin.DefaultLegacyEditor', priority=-100.0, enabled=true, pluginType=LegacyEditor
[DEBUG] - class='org.scijava.plugins.scripting.java.MainJavaRunner', priority=-100.0, enabled=true, pluginType=JavaRunner
[DEBUG] - class='io.scif.formats.APNGFormat$APNGTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.AVIFormat$Translator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.EPSFormat$EPSTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.FakeFormat$FakeTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.ICSFormat$ICSTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.ImageIOFormat$ImageIOTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.JPEGTileFormat', priority=-100.0, enabled=true, pluginType=Format
[DEBUG] - class='io.scif.formats.MicromanagerFormat$MicromanagerTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.qt.LegacyQTFormat$LegacyQTTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.qt.LegacyQTFormat', priority=-100.0, enabled=true, pluginType=Format
[DEBUG] - class='io.scif.formats.qt.NativeQTFormat$NativeQTTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.services.DefaultInitializeService', priority=-100.0, enabled=true, pluginType=Service
[DEBUG] - class='io.scif.ome.formats.OMEXMLFormat$OMEXMLTranslator', priority=-100.0, enabled=true, pluginType=Translator
[DEBUG] - class='org.scijava.app.SciJavaApp', name='SciJava', priority=-100.0, enabled=true, pluginType=App
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToNumericType', name='add', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.ui.awt.AWTUI', name='awt', priority=-100.0, enabled=true, pluginType=UserInterface
[DEBUG] - class='net.imagej.ops.crop.CropRAI', name='crop', aliases='slice', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapI', name='map', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapII2RAI', name='map', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.map.MapRAI2III', name='map', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.neighborhood.MapNeighborhood', name='map', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.MaxRealType', name='max', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.MeanRealType', name='mean', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.MedianRealType', name='median', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.MinRealType', name='min', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.project.ProjectRAI2II', name='project', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.misc.SizeIterableInterval', name='size', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.StdDevRealType', name='stddev', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.StdDevRealTypeDirect', name='stddev', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.SumRealType', name='sum', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.ui.swing.mdi.SwingMdiUI', name='swing-mdi', priority=-100.0, enabled=true, pluginType=UserInterface
[DEBUG] - class='net.imagej.ops.statistics.VarianceRealType', name='variance', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.statistics.VarianceRealTypeDirect', name='variance', priority=-100.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.text.io.TextIOPlugin', priority=-101.0, enabled=true, pluginType=IOPlugin
[DEBUG] - class='net.imagej.ops.map.MapI2I', name='map', priority=-101.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.plugins.tools.WandTool', name='Wand', description='Wand (tracing) tool', iconPath='/icons/tools/wand.png', priority=-110.0, enabled=false, pluginType=Tool
[DEBUG] - class='net.imagej.ui.swing.tools.SwingTextTool', name='Text', description='Text tool', iconPath='/icons/tools/text.png', priority=-115.0, enabled=false, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.ZoomTool', name='Zoom', description='Magnifying glass (or use "+" and "-" keys)', iconPath='/icons/tools/zoom.png', priority=-200.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.PanTool', name='Pan', description='Scrolling tool (or press space bar and drag)', iconPath='/icons/tools/pan.png', priority=-201.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.PaintBrushTool', name='Paintbrush', description='Paintbrush Tool', iconPath='/icons/tools/paintbrush.png', priority=-300.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.PencilTool', name='Pencil', description='Pencil Tool', iconPath='/icons/tools/pencil.png', priority=-301.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.SprayCanTool', name='SprayCan', label='Spray Can', description='Spray Can Tool', iconPath='/icons/tools/spray-can.png', priority=-303.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.FloodFillTool', name='FloodFill', label='Flood Fill', description='Flood Fill Tool', iconPath='/icons/tools/flood-fill.png', priority=-304.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.ArrowTool', name='Arrow', description='Arrow Tool', iconPath='/icons/tools/arrow.png', priority=-305.0, enabled=false, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.FgColorTool', name='Foreground', iconPath='/icons/tools/blank.png', priority=-500.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.plugins.tools.BgColorTool', name='Background', iconPath='/icons/tools/blankBlack.png', priority=-501.0, enabled=true, pluginType=Tool
[DEBUG] - class='io.scif.ome.formats.OMETIFFFormat$OMETIFFTranslator', priority=-9998.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.ome.formats.OMETIFFFormat', priority=-9998.0, enabled=true, pluginType=Format
[DEBUG] - class='org.scijava.ui.FilePreprocessor', priority=-9999.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.module.process.LoadInputsPreprocessor', priority=-9999.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='io.scif.formats.TIFFFormat$TIFFTranslator', priority=-9999.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.TIFFFormat', priority=-9999.0, enabled=true, pluginType=Format
[DEBUG] - class='org.scijava.display.DisplayPostprocessor', priority=-10000.0, enabled=true, pluginType=PostprocessorPlugin
[DEBUG] - class='org.scijava.ui.awt.widget.AWTInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.ui.swing.widget.SwingInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.ui.swing.widget.SwingMdiInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.plugins.text.plain.PlainTextFormat', priority=-10000.0, enabled=true, pluginType=TextFormat
[DEBUG] - class='net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter', priority=-10000.0, enabled=true, pluginType=JHotDrawAdapter
[DEBUG] - class='io.scif.DefaultTranslator', priority=-10000.0, enabled=true, pluginType=Translator
[DEBUG] - class='io.scif.formats.MinimalTIFFFormat', priority=-10000.0, enabled=true, pluginType=Format
[DEBUG] - class='org.scijava.platform.DefaultPlatform', name='Default', priority=-10000.0, enabled=true, pluginType=Platform
[DEBUG] - class='net.imagej.plugins.tools.AcceleratorHandler', name='Keyboard Shortcuts', priority=-10000.0, enabled=true, pluginType=Tool
[DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToImageFunctional', name='add', priority=-10000.0, enabled=true, pluginType=Op
[DEBUG] - class='net.imagej.ops.chunker.InterleavedChunker', name='chunker', priority=-10000.0, enabled=true, pluginType=Op
[DEBUG] - class='org.scijava.module.process.CheckInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='org.scijava.module.process.SaveInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=PreprocessorPlugin
[DEBUG] - class='io.scif.formats.TIFFJAIFormat', priority=-10001.0, enabled=true, pluginType=Format
[DEBUG] - class='net.imagej.ops.misc.SizeIterable', name='size', priority=-Infinity, enabled=true, pluginType=Op
[WARNING] 1 exceptions occurred during plugin discovery.
[DEBUG] io.scif.ome.commands.OMEXMLToolCommand
java.lang.ClassCastException: io.scif.tools.SCIFIOToolCommand
	at org.scijava.annotations.IndexItem.adapt(IndexItem.java:195)
	at org.scijava.annotations.IndexItem.access$000(IndexItem.java:47)
	at org.scijava.annotations.IndexItem$1.invoke(IndexItem.java:100)
	at $Proxy1.type(Unknown Source)
	at org.scijava.plugin.DefaultPluginFinder.createInfo(DefaultPluginFinder.java:101)
	at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:81)
	at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:49)
	at org.scijava.plugin.PluginIndex.discover(PluginIndex.java:107)
	at org.scijava.Context.<init>(Context.java:175)
	at org.scijava.Context.<init>(Context.java:121)
	at org.scijava.Context.<init>(Context.java:81)
	at org.scijava.Context.<init>(Context.java:70)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at net.imagej.patcher.EssentialLegacyHooks.interceptRunPlugIn(EssentialLegacyHooks.java:177)
	at ij.IJ.runPlugIn(IJ.java)
	at ij.IJ.runPlugIn(IJ.java:154)
	at net.imagej.legacy.plugin.LegacyInitializer.run(LegacyInitializer.java:85)
	at net.imagej.patcher.EssentialLegacyHooks.initialized(EssentialLegacyHooks.java:138)
	at ij.IJ.init(IJ.java:85)
	at ij.ImageJ.<init>(ImageJ.java:174)
	at ij.ImageJ.main(ImageJ.java:665)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at net.imagej.patcher.LegacyEnvironment.main(LegacyEnvironment.java:373)
	at fiji.Main.main(Main.java:153)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:231)
	at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:157)
	at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:70)
[DEBUG] Created service 'org.scijava.plugin.DefaultPluginService' in 21 ms
[DEBUG] Creating service: org.scijava.object.DefaultObjectService
log4j:WARN No appenders could be found for logger (org.bushe.swing.event.EventService).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
[DEBUG] Created service 'org.scijava.object.DefaultObjectService' in 5 ms
[DEBUG] Creating service: org.scijava.module.DefaultModuleService
[DEBUG] Created service 'org.scijava.module.DefaultModuleService' in 1 ms
[DEBUG] Creating service: org.scijava.command.DefaultCommandService
[DEBUG] Created service 'org.scijava.command.DefaultCommandService' in 24 ms
[DEBUG] Created service 'org.scijava.script.DefaultScriptService' in 55 ms
[DEBUG] Creating service: net.imagej.lut.DefaultLUTService
[DEBUG] Creating service: net.imagej.DefaultDatasetService
[DEBUG] Creating service: io.scif.services.DefaultFormatService
[DEBUG] Created service 'io.scif.services.DefaultFormatService' in 1 ms
[DEBUG] Creating service: net.imagej.types.DefaultDataTypeService
[INFO] Found 11 DataType plugins.
[DEBUG] Created service 'net.imagej.types.DefaultDataTypeService' in 18 ms
[DEBUG] Created service 'net.imagej.DefaultDatasetService' in 27 ms
[DEBUG] Creating service: org.scijava.display.DefaultDisplayService
[DEBUG] Created service 'org.scijava.display.DefaultDisplayService' in 2 ms
[DEBUG] Creating service: net.imagej.display.DefaultImageDisplayService
[DEBUG] Created service 'net.imagej.display.DefaultImageDisplayService' in 2 ms
[DEBUG] Created service 'net.imagej.lut.DefaultLUTService' in 33 ms
[DEBUG] Creating service: org.scijava.input.DefaultInputService
[DEBUG] Created service 'org.scijava.input.DefaultInputService' in 3 ms
[DEBUG] Creating service: org.scijava.ui.DefaultUIService
[DEBUG] Creating service: org.scijava.app.DefaultStatusService
[DEBUG] Creating service: org.scijava.app.DefaultAppService
[DEBUG] Created service 'org.scijava.app.DefaultAppService' in 0 ms
[DEBUG] Created service 'org.scijava.app.DefaultStatusService' in 2 ms
[DEBUG] Creating service: org.scijava.platform.DefaultPlatformService
[DEBUG] Creating service: net.imagej.plugins.commands.app.CoreAppEventService
[DEBUG] Created service 'net.imagej.plugins.commands.app.CoreAppEventService' in 2 ms
[INFO] Found 1 Platform plugins.
[INFO] Configuring platform: org.scijava.platform.DefaultPlatform
[DEBUG] Created service 'org.scijava.platform.DefaultPlatformService' in 5 ms
[DEBUG] Creating service: org.scijava.menu.DefaultMenuService
[DEBUG] Created service 'org.scijava.menu.DefaultMenuService' in 1 ms
[DEBUG] Creating service: org.scijava.tool.DefaultToolService
[DEBUG] Created service 'org.scijava.tool.DefaultToolService' in 3 ms
[DEBUG] Creating service: org.scijava.options.DefaultOptionsService
[DEBUG] Created service 'org.scijava.options.DefaultOptionsService' in 0 ms
[DEBUG] Created service 'org.scijava.ui.DefaultUIService' in 14 ms
[DEBUG] Creating service: org.scijava.ui.dnd.DefaultDragAndDropService
[DEBUG] Created service 'org.scijava.ui.dnd.DefaultDragAndDropService' in 2 ms
[DEBUG] Creating service: org.scijava.text.DefaultTextService
[DEBUG] Created service 'org.scijava.text.DefaultTextService' in 1 ms
[DEBUG] Creating service: org.scijava.io.DefaultRecentFileService
[DEBUG] Created service 'org.scijava.io.DefaultRecentFileService' in 29 ms
[DEBUG] Creating service: org.scijava.io.DefaultIOService
[DEBUG] Created service 'org.scijava.io.DefaultIOService' in 1 ms
[DEBUG] Creating service: org.scijava.widget.DefaultWidgetService
[INFO] Found 22 InputWidget plugins.
[DEBUG] Created service 'org.scijava.widget.DefaultWidgetService' in 1 ms
[DEBUG] Creating service: org.scijava.event.DefaultEventHistory
[DEBUG] Created service 'org.scijava.event.DefaultEventHistory' in 1 ms
[DEBUG] Creating service: org.scijava.console.DefaultConsoleService
[DEBUG] Created service 'org.scijava.console.DefaultConsoleService' in 1 ms
[DEBUG] Creating service: net.imglib2.meta.units.DefaultUnitService
[DEBUG] Created service 'net.imglib2.meta.units.DefaultUnitService' in 13 ms
[DEBUG] Creating service: net.imagej.readme.DefaultReadmeService
[DEBUG] Created service 'net.imagej.readme.DefaultReadmeService' in 1 ms
[DEBUG] Creating service: net.imagej.threshold.DefaultThresholdService
[DEBUG] Creating service: net.imagej.display.DefaultOverlayService
[DEBUG] Creating service: net.imagej.ui.awt.AWTRenderingService
[DEBUG] Created service 'net.imagej.ui.awt.AWTRenderingService' in 0 ms
[DEBUG] Created service 'net.imagej.display.DefaultOverlayService' in 3 ms
[DEBUG] Created service 'net.imagej.threshold.DefaultThresholdService' in 5 ms
[DEBUG] Creating service: net.imagej.operator.DefaultCalculatorService
[DEBUG] Created service 'net.imagej.operator.DefaultCalculatorService' in 1 ms
[DEBUG] Creating service: net.imagej.autoscale.DefaultAutoscaleService
[DEBUG] Created service 'net.imagej.autoscale.DefaultAutoscaleService' in 1 ms
[DEBUG] Creating service: net.imagej.DefaultImgPlusService
[DEBUG] Created service 'net.imagej.DefaultImgPlusService' in 0 ms
[DEBUG] Creating service: net.imagej.sampler.DefaultSamplerService
[DEBUG] Created service 'net.imagej.sampler.DefaultSamplerService' in 2 ms
[DEBUG] Creating service: net.imagej.display.DefaultZoomService
[DEBUG] Created service 'net.imagej.display.DefaultZoomService' in 0 ms
[DEBUG] Creating service: net.imagej.display.DefaultWindowService
[DEBUG] Created service 'net.imagej.display.DefaultWindowService' in 1 ms
[DEBUG] Creating service: net.imagej.ui.DefaultImageJUIService
[DEBUG] Created service 'net.imagej.ui.DefaultImageJUIService' in 0 ms
[DEBUG] Creating service: net.imagej.animation.DefaultAnimationService
[DEBUG] Created service 'net.imagej.animation.DefaultAnimationService' in 1 ms
[DEBUG] Creating service: net.imagej.measure.DefaultMeasurementService
[DEBUG] Created service 'net.imagej.measure.DefaultMeasurementService' in 1 ms
[DEBUG] Creating service: net.imagej.measure.DefaultStatisticsService
[DEBUG] Created service 'net.imagej.measure.DefaultStatisticsService' in 1 ms
[DEBUG] Creating service: net.imagej.legacy.DefaultLegacyService
[INFO] Found 0 scripts
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false
	items[0] = 	Window
		Tile Vertical
	items[1] = 	Help
		ImageJ Website...
		About ImageJ...
		Switch to Legacy Mode
		Update...
		Upload Sample Image
	items[2] = 	Process
		Smooth
		Sharpen
		Find Edges
		Image Calculator...
		Binary
			Binarize...
			Close
			Create Mask...
			Dilate
			Erode
			Make Binary...
			Make Mask Overlay...
			Open
		Filters
			Gaussian Blur...
		Math
			Add...
			Subtract...
			Multiply...
			Divide...
			Power...
			AND...
			OR...
			XOR...
			Min...
			Max...
			Gamma...
			Set...
			Log...
			Exp...
			Square...
			Square Root...
			Reciprocal...
			NaN Background
			Abs...
			Equation...
		Noise
			Add Noise...
			Add Specified Noise...
			Salt and Pepper
			Noise Reduction
				Adaptive Median
				Alpha Trimmed Mean
				Contraharmonic Mean
				Geometric Mean
				Harmonic Mean
				Maximum
				Mean
				Median
				Midpoint
				Minimum
				Trimmed Mean
		Shadows
			North
			Northeast
			East
			Southeast
			South
			Southwest
			West
			Northwest
			Shadows Demo
	items[3] = 	Plugins
		Debug
			Dump Stack
			Inspect Image
			Inspect Objects
			Invalid Command
			Subscribers
			System Information
			Watch Events
		Macros
			Record...
		Run Script...
		Sandbox
			Button Demo
			Dialog Prompt Demo
			Mandelbrot Set
			Measurement Demo
			Mixed World Command
			Multidimensional Test Image
			Parameter Assignment Order
			PointSet Demo
			Statistics Demo
			Table Demo
			TextDisplayTest
		Shortcuts
			List Shortcuts...
			Create Shortcut...
		Utilities
			Capture Screen
			Capture Image
			Benchmark
			Find Commands...
	items[4] = 	Image
		Adjust
			Auto-Contrast
			Brightness/Contrast...
			Delete Threshold
			Resize...
			Threshold...
		Animation
			Start Animation
			Stop Animation
			Stop All Animations
			Animation Options...
		Axes
			Add Axis...
			Axis Position Backward
			Axis Position Forward
			Delete Axis...
			Edit Axes...
			Reorder Axis
			Set Active Axis...
			Set Axis Position...
		Color
			Channels Tool...
			Show LUT
			Show LUT As Table
			Spectral Composite...
		Convert
		Convolve
		Crop
		Data
			Add Data...
			Delete Data...
			Reorder Data...
		Duplicate
		Lookup Tables
			Select...
			16_colors
			3-3-2 RGB
			5_ramps
			6_shades
			Blue
			Cyan
			Cyan Hot
			Fire
			Grays
			Green
			Green Fire Blue
			HiLo
			ICA
			ICA2
			ICA3
			Ice
			Magenta
			Magenta Hot
			Orange Hot
			Rainbow RGB
			Red
			Red Hot
			Red-Green
			Spectrum
			Thermal
			Yellow
			Yellow Hot
			blue_orange_icb
			brgbcmyw
			cool
			edges
			gem
			glasbey
			glow
			phase
			physics
			royal
			sepia
			smart
			thal
			thallium
			unionjack
			NCSA PalEdit
				16_colors
				5_ramps
				6_shades
				blue_orange_icb
				brgbcmyw
				cool
				edges
				gem
				phase
				royal
				sepia
				smart
				thal
				thallium
				unionjack
			WCIF
				Cyan Hot
				Green Fire Blue
				HiLo
				ICA
				ICA2
				ICA3
				Magenta Hot
				Orange Hot
				Rainbow RGB
				Red Hot
				Yellow Hot
		Overlay
			From Overlay Manager
			Remove Overlay References
			Remove Overlay
			Flatten
			Properties...
			Labels...
			Add Image
			Overlay Manager
			Overlay Options...
		Show Info...
		Stacks
			Orthogonal Views
			Reslice...
		Threshold
			Apply Threshold
			Project
		Transform
			Flip Horizontally
			Flip Vertically
			Flip Axis
			Rotate 90 Degrees Right
			Rotate 90 Degrees Left
			Bin...
			Rotate...
			Translate...
		Type
			Change...
		Zoom
			In
			Out
			Original Scale
			View 100%
			To Selection
			Set...
	items[5] = 	Edit
		Copy To System
		Fill
		Invert...
		Options
			Line Width...
			Input/Output...
			Fonts...
			Profile Plot Options...
			Rounded Rect Tool...
			Arrow Tool...
			Point Tool...
			Wand Tool...
			Channels...
			Appearance...
			Conversions...
			Memory & Threads...
			Proxy Settings...
			Compiler...
			DICOM...
			Compatibility...
			Misc...
			Reset
			Look and Feel...
		Selection
			Select View
			Select Overlays
			Deselect Overlays
			Specify...
	items[6] = 	Analyze
		Histogram Plot
		Tools
			Synchronize Windows
	items[7] = 	File
		Open...
		Open Recent
			Clear List
		Close
		Close All
		Revert
		Save
		Save As...
		Preferences
		Quit
		New
			Image...
			Script...,null,null), called from non-EDT Thread:null
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false
	items[0] = 	Split Channels
	items[1] = 	Duplicate...,null,null), called from non-EDT Thread:null
[DEBUG] - Skeletonize3D_.Skeletonize3D_ [menu = Plugins > Skeleton > Skeletonize (2D/3D), weight = 1.0]
[DEBUG] - TJ_Translate [menu = Plugins > Transform > TransformJ > TransformJ Translate, weight = 9.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.frame.Channels [menu = Image > Color > Channels Tool..., weight = 3.0]
[DEBUG] - ij.plugin.Filters3D("median") [menu = Process > Filters > Median 3D..., weight = 19.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Thresholder [menu = Process > Binary > Make Binary, weight = 0.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Delayed_Snapshot_Window.bsh") [menu = Plugins > Examples > Delayed Snapshot Window, weight = 3.0]
[DEBUG] - Sync_Windows("") [menu = Analyze > Tools > Sync Windows, weight = 19.0]
[DEBUG] - ij.plugin.URLOpener("bat-cochlea-renderings.zip") [menu = File > Open Samples > Bat Cochlea Renderings (449K), weight = 2.0]
[DEBUG] - process3d.Convolve_3d [menu = Plugins > Process > Convolve (3D), weight = 25.0]
[DEBUG] - ij.plugin.JavaProperties [menu = Plugins > Utilities > ImageJ Properties..., weight = 27.0]
[DEBUG] - process3d.IFT_ [menu = Plugins > Process > IFT (3D), weight = 16.0]
[DEBUG] - BalloonSegmentation_ [menu = Plugins > Segmentation > Balloon, weight = 5.0]
[DEBUG] - Coloc_2 [menu = Analyze > Colocalization > Coloc 2, weight = 2.0]
[DEBUG] - fiji.scripting.java.Refresh_Javas [menu = Plugins > Scripting > Refresh Javas, weight = 10.0]
[DEBUG] - QuickPALM.Analyse_Particles [menu = Analyze > QuickPALM > Analyse Particles, weight = 0.0]
[DEBUG] - Slice_Keeper [menu = Image > Stacks > Tools  > Slice Keeper, weight = 34.0]
[DEBUG] - ij.plugin.Converter("HSB Stack") [menu = Image > Type > HSB Stack, weight = 16.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/Bulls_Eye.txt") [menu = Plugins > Macros > Bulls Eye, weight = 1.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Edit_LUT_As_Text.py") [menu = Plugins > Examples > Edit LUT As Text, weight = 4.0]
[DEBUG] - ij.plugin.Filters3D("var") [menu = Process > Filters > Variance 3D..., weight = 23.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("mul") [menu = Process > Math > Multiply..., weight = 2.0]
[DEBUG] - Stitch_Image_Collection [menu = Plugins > Stitching > deprecated > Stitch Collection of Images, weight = 4.0]
[DEBUG] - ij.plugin.GelAnalyzer("reset") [menu = Analyze > Gels > Reset, weight = 4.0]
[DEBUG] - ij.plugin.Distribution [menu = Analyze > Distribution..., weight = 3.0]
[DEBUG] - isosurface.Show_Colour_Surfaces [menu = Plugins > Process > Show Color Surfaces, weight = 30.0]
[DEBUG] - RJ_Panel [menu = Process > Noise > RandomJ > RandomJ Panel, weight = 5.0]
[DEBUG] - IJ_Robot [menu = Plugins > Utilities > IJ Robot, weight = 6.0]
[DEBUG] - Rohlfing_SBA [menu = Plugins > Process > Shape-based averaging, weight = 4.0]
[DEBUG] - loci.plugins.LociImporter("location=[Local machine] windowless=false ") [menu = Plugins > Bio-Formats > Bio-Formats Importer, weight = 0.0]
[DEBUG] - ij.plugin.WindowOrganizer("cascade") [menu = Window > Cascade, weight = 3.0]
[DEBUG] - reconstructreader.reconstruct.Reconstruct_Reader [menu = File > Import > Reconstruct Project..., weight = 41.0]
[DEBUG] - mpicbg.ij.plugin.NormalizeLocalContrast [menu = Plugins > Integral Image Filters > Normalize Local Contrast, weight = 4.0]
[DEBUG] - ini.trakem2.New_Project("blank") [menu = File > New > TrakEM2 (blank), weight = 16.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("close") [menu = File > Close, weight = 16.0]
[DEBUG] - fiji.util.ArrowTool [menu = Image > Annotate > Arrow , weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.PointToolOptions [menu = Edit > Options > Point Tool..., weight = 6.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("blue") [menu = Image > Lookup Tables > Blue, weight = 19.0]
[DEBUG] - Stitch_Image_Grid [menu = Plugins > Stitching > deprecated > Stitch Grid of Images, weight = 2.0]
[DEBUG] - Duplicate_Image5D("") [menu = Plugins > Image5D > Duplicate, weight = 29.0]
[DEBUG] - MTrack2_ [menu = Plugins > Tracking > MTrack2 , weight = 6.0]
[DEBUG] - TJ_Rotate [menu = Plugins > Transform > TransformJ > TransformJ Rotate, weight = 7.0]
[DEBUG] - Example02_CallCommand [menu = Plugins > Example02 CallCommand, weight = 20.0]
[DEBUG] - FlowJ_ [menu = Analyze > Optic Flow > FlowJ, weight = 0.0]
[DEBUG] - fiji.process.Image_Expression_Parser [menu = Process > Image Expression Parser, weight = 37.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/downsample_.js") [menu = Plugins > Examples > downsample , weight = 17.0]
[DEBUG] - ij.plugin.LUT_Editor [menu = Image > Color > Edit LUT..., weight = 18.0]
[DEBUG] - QuickPALM.Run_MyMacro("Fast_VirtualStack_Opener.txt") [menu = File > Import > QuickPALM >  Open VirtualStack, weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("or") [menu = Process > Math > OR..., weight = 5.0]
[DEBUG] - ij.plugin.Converter("8-bit Color") [menu = Image > Type > 8-bit Color, weight = 3.0]
[DEBUG] - ij.plugin.ImageJ_Updater("menus") [menu = Help > Refresh Menus, weight = 30.0]
[DEBUG] - fiji.selection.Select_Bounding_Box [menu = Edit > Selection > Select Bounding Box, weight = 45.0]
[DEBUG] - ij.plugin.filter.RankFilters("min") [menu = Process > Filters > Minimum..., weight = 4.0]
[DEBUG] - io.Icns_Writer [menu = File > Save As > Icns ..., weight = 36.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("yellow") [menu = Image > Lookup Tables > Yellow, weight = 22.0]
[DEBUG] - Remove_Slope [menu = Analyze > TopoJ > Remove Slope, weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.LutLoader("redgreen") [menu = Image > Lookup Tables > Red/Green, weight = 23.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("demo") [menu = Process > Shadows > Shadows Demo, weight = 18.0]
[DEBUG] - Interactive_3D_Surface_Plot [menu = Analyze > 3D Surface Plot, weight = 43.0]
[DEBUG] - ij.plugin.frame.MemoryMonitor [menu = Plugins > Utilities > Monitor Memory..., weight = 4.0]
[DEBUG] - Thread_Killer [menu = Plugins > Utilities > Thread killer, weight = 5.0]
[DEBUG] - Transform_Perspective [menu = Plugins > Transform > Interactive Perspective, weight = 3.0]
[DEBUG] - ij.plugin.BatchConverter [menu = Process > Batch > Convert..., weight = 1.0]
[DEBUG] - FJ_Panel [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Panel, weight = 5.0]
[DEBUG] - siox.Load_Segmentation [menu = Plugins > Segmentation > Apply saved SIOX segmentator, weight = 8.0]
[DEBUG] - ij.plugin.URLOpener("confocal-series.zip") [menu = File > Open Samples > Confocal Series (2.2MB), weight = 9.0]
[DEBUG] - mpicbg.ij.plugin.MSEBlockFlow [menu = Plugins > Optic Flow > Integral Block MSE, weight = 1.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/list_all_threads.py") [menu = Plugins > Examples > list all threads, weight = 18.0]
[DEBUG] - ij.plugin.Converter("RGB Color") [menu = Image > Type > RGB Color, weight = 4.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.ScreenGrabber [menu = Plugins > Utilities > Capture Screen, weight = 15.0]
[DEBUG] - io.LSS16_Writer [menu = File > Save As > LSS16 ..., weight = 38.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("and") [menu = Process > Math > AND..., weight = 4.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.SpecifyROI [menu = Edit > Selection > Specify..., weight = 26.0]
[DEBUG] - ij.plugin.Stack_Statistics [menu = Image > Stacks > Statistics, weight = 24.0]
[DEBUG] - vib.Average_Images [menu = Plugins > Stacks > Average Images, weight = 1.0]
[DEBUG] - net.sf.ij.plugin.ImageIOSaveAsPlugin("PNM") [menu = File > Save As > PNM ..., weight = 43.0]
[DEBUG] - ij.plugin.TextReader [menu = File > Import > Text Image... , weight = 3.0]
[DEBUG] - ij.plugin.SimpleCommands("search") [menu = Plugins > Utilities > Search..., weight = 2.0]
[DEBUG] - ij.plugin.Macro_Runner("Scripts/File/Make_Screencast.bsh") [menu = Plugins > Scripts > File > Make Screencast, weight = 0.0]
[DEBUG] - TJ_Embed [menu = Plugins > Transform > TransformJ > TransformJ Embed, weight = 2.0]
[DEBUG] - util.Quantile_Based_Normalization [menu = Plugins > Process > Quantile Based Normalization, weight = 10.0]
[DEBUG] - io.TorstenRaw_GZ_Reader [menu = File > Import > TorstenRaw GZ Reader..., weight = 49.0]
[DEBUG] - ij.plugin.SimpleCommands("import") [menu = File > Import > Results... , weight = 5.0]
[DEBUG] - [BLACKLISTED] ij.plugin.StackReverser [menu = Image > Transform > Flip Z, weight = 2.0]
[DEBUG] - mpicbg.ij.plugin.ElasticAlign [menu = Plugins > Registration > Elastic > Elastic Stack Alignment, weight = 0.0]
[DEBUG] - LSM_Toolbox("") [menu = File > Import > Show LSMToolbox, weight = 59.0]
[DEBUG] - EDT_S1D("run") [menu = Analyze > Local Thickness > Geometry to Distance Map, weight = 1.0]
[DEBUG] - Sholl_Analysis [menu = Analyze > Sholl Analysis..., weight = 38.0]
[DEBUG] - ij.plugin.filter.BackgroundSubtracter [menu = Process > Subtract Background..., weight = 23.0]
[DEBUG] - FJ_Options [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Options, weight = 4.0]
[DEBUG] - ij.plugin.NewPlugin("macro-tool") [menu = Plugins > New  > Macro Tool, weight = 1.0]
[DEBUG] - Local_Thickness_Parallel("run") [menu = Analyze > Local Thickness > Distance Ridge to Local Thickness, weight = 3.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("set") [menu = Image > Stacks > Set Slice..., weight = 4.0]
[DEBUG] - ij.plugin.SimpleCommands("about") [menu = Help > About Plugins > About This Submenu..., weight = 0.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("macro") [menu = Process > Math > Macro..., weight = 18.0]
[DEBUG] - CPU_Meter [menu = Plugins > Utilities > CPU Meter, weight = 0.0]
[DEBUG] - ij.plugin.URLOpener("boats.gif") [menu = File > Open Samples > Boats (356K), weight = 4.0]
[DEBUG] - ij.plugin.TextFileReader [menu = File > Import > Text File... , weight = 4.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("log") [menu = Process > Math > Log, weight = 11.0]
[DEBUG] - loci.plugins.LociImporter("location=[Local machine] windowless=true ") [menu = File > Import > Bio-Formats (Windowless), weight = 34.0]
[DEBUG] - fiji.color.Convert_Red_To_Magenta [menu = Image > Color > Replace Red with Magenta, weight = 39.0]
[DEBUG] - MultipleImageProcessor [menu = Process > Multiple Image Processor, weight = 38.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.Filters("add") [menu = Process > Noise > Add Noise, weight = 0.0]
[DEBUG] - Triangle_Algorithm [menu = Plugins > Process > Triangle Algorithm, weight = 7.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("add") [menu = Image > Overlay > Add Selection..., weight = 0.0]
[DEBUG] - ij.plugin.URLOpener("clown.jpg") [menu = File > Open Samples > Clown (14K), weight = 8.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Options("dicom") [menu = Edit > Options > DICOM..., weight = 14.0]
[DEBUG] - Calculator_Plus [menu = Process > Calculator Plus, weight = 36.0]
[DEBUG] - Image5D_Stack_to_RGB("") [menu = Plugins > Image5D > Image5D Stack to RGB, weight = 45.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("open") [menu = File > Open..., weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("magenta") [menu = Image > Lookup Tables > Magenta, weight = 21.0]
[DEBUG] - RGB_to_Image5D("") [menu = Plugins > Image5D > RGB to Image5D, weight = 17.0]
[DEBUG] - [BLACKLISTED] ij.plugin.CompositeConverter [menu = Image > Color > Make Composite, weight = 15.0]
[DEBUG] - ini.trakem2.utils.Utils [menu = Help > About Plugins > About TrakEM2..., weight = 34.0]
[DEBUG] - process3d.Flood_Fill [menu = Plugins > Process > Flood Fill(3D), weight = 14.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Converter("8-bit") [menu = Image > Type > 8-bit, weight = 0.0]
[DEBUG] - fiji.denoise.ROF_Denoise [menu = Process > Noise > ROF Denoise, weight = 26.0]
[DEBUG] - AmiraMeshReader_ [menu = File > Import > Amira..., weight = 35.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("show") [menu = Image > Overlay > Show Overlay, weight = 3.0]
[DEBUG] - ij.plugin.CanvasResizer [menu = Image > Adjust > Canvas Size..., weight = 6.0]
[DEBUG] - process3d.Particle_Analyzer_3D [menu = Plugins > Process > Particle Analyzer (3D), weight = 22.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.Filters("invert") [menu = Edit > Invert, weight = 30.0]
[DEBUG] - ij.plugin.Selection("spline") [menu = Edit > Selection > Fit Spline, weight = 3.0]
[DEBUG] - fiji.features.Frangi_("") [menu = Plugins > Process > Frangi Vesselness (imglib, experimental), weight = 28.0]
[DEBUG] - AmiraTableWriter_ [menu = File > Save As > AmiraTable ..., weight = 28.0]
[DEBUG] - BSH.Refresh_BSH_Scripts [menu = Plugins > Scripting > Refresh BSH Scripts, weight = 14.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/plugins") [menu = Help > Plugins..., weight = 16.0]
[DEBUG] - [BLACKLISTED] ij.plugin.frame.RoiManager [menu = Analyze > Tools > ROI Manager..., weight = 4.0]
[DEBUG] - MultiChannel_SPIM_Registration [menu = Plugins > SPIM Registration > deprecated > MultiChannel Registration, weight = 2.0]
[DEBUG] - QuickPALM.Load_particles_tableFromImg [menu = Analyze > QuickPALM > Load Particles (.tif file - fast), weight = 36.0]
[DEBUG] - RJ_Uniform [menu = Process > Noise > RandomJ > RandomJ Uniform, weight = 7.0]
[DEBUG] - ij.plugin.XYCoordinates [menu = Analyze > Tools > Save XY Coordinates..., weight = 0.0]
[DEBUG] - net.sf.ij.plugin.ImageIOSaveAsPlugin("TIFF") [menu = File > Save As > Compressed TIFF ..., weight = 44.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.Binary("close") [menu = Process > Binary > Close-, weight = 15.0]
[DEBUG] - tracing.Test_Single_Voxel [menu = Plugins > Examples > Single Voxel in 3D, weight = 12.0]
[DEBUG] - org.janelia.vaa3d.reader.Vaa3d_Reader [menu = File > Import > Vaa3d..., weight = 62.0]
[DEBUG] - ij.plugin.URLOpener [menu = File > Import > URL..., weight = 7.0]
[DEBUG] - process3d.Maximum_ [menu = Plugins > Process > Max (3D), weight = 19.0]
[DEBUG] - FJ_Structure [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Structure, weight = 7.0]
[DEBUG] - fiji.stacks.Hyperstack_rearranger [menu = Image > Hyperstacks > Re-order Hyperstack ..., weight = 14.0]
[DEBUG] - ij.plugin.filter.Writer("jpeg") [menu = File > Save As > Jpeg..., weight = 2.0]
[DEBUG] - MOPS_ExtractPointRoi [menu = Plugins > Feature Extraction > Extract MOPS Correspondences, weight = 1.0]
[DEBUG] - [OVERRIDDEN] fiji.util.Fiji_Uploader [menu = Help > Upload Sample Image, weight = 56.0]
[DEBUG] - plugin.Lasso_ [menu = Plugins > Segmentation > Blow/Lasso Tool, weight = 9.0]
[DEBUG] - Open_Series_As_Image5D("") [menu = Plugins > Image5D > Open Series As Image5D, weight = 3.0]
[DEBUG] - ij.plugin.WindowOrganizer("show") [menu = Window > Show All, weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("new") [menu = File > New > Image..., weight = 0.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://www.openmicroscopy.org/site/support/bio-formats/users/index.html") [menu = Plugins > Bio-Formats > Help, weight = 59.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py") [menu = Plugins > Examples > TrakEM2_Example_Scripts > Measure AreaLists, weight = 1.0]
[DEBUG] - graphcut.Graph_Cut [menu = Plugins > Segmentation > Graph Cut, weight = 4.0]
[DEBUG] - Biorad_Writer [menu = File > Save As > Biorad ..., weight = 29.0]
[DEBUG] - ij.plugin.Commands("tab") [menu = Window > Put Behind [tab], weight = 2.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py") [menu = Plugins > Examples > TrakEM2_Example_Scripts > T2 set all transforms to identity, weight = 3.0]
[DEBUG] - PointPicker_ [menu = Analyze > Tools > PointPicker, weight = 18.0]
[DEBUG] - levelsets.ij.LevelSet [menu = Plugins > Segmentation > Level Sets, weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("close-all") [menu = File > Close All, weight = 17.0]
[DEBUG] - ij.plugin.filter.Filler("label") [menu = Analyze > Label, weight = 4.0]
[DEBUG] - ij.plugin.ZAxisProfiler [menu = Image > Stacks > Plot Z-axis Profile, weight = 22.0]
[DEBUG] - fiji.threshold.Auto_Local_Threshold [menu = Image > Adjust > Auto Local Threshold, weight = 23.0]
[DEBUG] - ij.plugin.StackMaker [menu = Image > Stacks > Tools  > Montage to Stack..., weight = 5.0]
[DEBUG] - Biorad_Reader [menu = File > Import > Biorad..., weight = 36.0]
[DEBUG] - [BLACKLISTED, OVERRIDDEN] ij.plugin.AboutBox [menu = Help > About ImageJ..., weight = 42.0]
[WARNING] Overridden plugin ij.plugin.AboutBox is blacklisted
[DEBUG] - TJ_Affine [menu = Plugins > Transform > TransformJ > TransformJ Affine, weight = 0.0]
[DEBUG] - ij.plugin.filter.AVI_Writer [menu = File > Save As > AVI... , weight = 7.0]
[DEBUG] - ij.plugin.filter.Writer("lut") [menu = File > Save As > LUT..., weight = 12.0]
[DEBUG] - TJ_Matrix [menu = Plugins > Transform > TransformJ > TransformJ Matrix, weight = 3.0]
[DEBUG] - ij.plugin.filter.RankFilters("mean") [menu = Process > Filters > Mean..., weight = 3.0]
[DEBUG] - ij.plugin.Macro_Runner("Analyze/Measure_RGB.txt") [menu = Plugins > Analyze > Measure RGB, weight = 0.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/notes.html") [menu = Help > ImageJ News..., weight = 1.0]
[DEBUG] - marchingcubes.ExportMesh_ [menu = File > Save As > Wavefront .OBJ ..., weight = 30.0]
[DEBUG] - ij.plugin.filter.Rotator [menu = Image > Transform > Rotate... , weight = 5.0]
[DEBUG] - Transform_Affine [menu = Plugins > Transform > Interactive Affine, weight = 2.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Options("conv") [menu = Edit > Options > Conversions..., weight = 10.0]
[DEBUG] - ij.plugin.LutLoader("invert") [menu = Image > Lookup Tables > Invert LUT, weight = 0.0]
[DEBUG] - Stack_Rotate [menu = Plugins > Transform > Interactive Stack Rotation, weight = 5.0]
[DEBUG] - mpicbg.ij.plugin.BlockMatching_TestParameters [menu = Plugins > Registration > Elastic > Test Block Matching Parameters, weight = 2.0]
[DEBUG] - [BLACKLISTED] ij.plugin.StackReverser [menu = Image > Stacks > Tools  > Reverse, weight = 3.0]
[DEBUG] - process3d.Maximum_ [menu = Plugins > Process > Maximum (3D), weight = 18.0]
[DEBUG] - ij.plugin.filter.RoiWriter [menu = File > Save As > Selection..., weight = 13.0]
[DEBUG] - ij.plugin.URLOpener("http://fiji.sc/samples/_malaria_parasites.tif") [menu = File > Open Samples > Malaria Sporozoites (9.2MB), weight = 57.0]
[DEBUG] - ij.plugin.filter.Binary("options") [menu = Process > Binary > Options..., weight = 53.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Zoom("to") [menu = Image > Zoom > To Selection, weight = 4.0]
[DEBUG] - fiji.plugin.trackmate.LoadTrackMatePlugIn_ [menu = Plugins > Tracking > Load a TrackMate file, weight = 2.0]
[DEBUG] - ij.plugin.Clipboard("showsys") [menu = File > New > System Clipboard, weight = 4.0]
[DEBUG] - loci.plugins.About("") [menu = Plugins > LOCI > Please use the 'Bio-Formats' menu item instead, weight = 0.0]
[DEBUG] - Transfer_Channel_Settings("") [menu = Plugins > Image5D > Transfer Channel Settings, weight = 46.0]
[DEBUG] - ij.plugin.Macro_Runner("spiral/Create_Spiral_Image.bsh") [menu = Plugins > spiral > Create Spiral Image, weight = 2.0]
[DEBUG] - ij.plugin.Selection("toarea") [menu = Edit > Selection > Line to Area, weight = 29.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Transformer("fliph") [menu = Image > Transform > Flip Horizontally, weight = 0.0]
[DEBUG] - Stitching_2D [menu = Plugins > Stitching > deprecated > 2D Stitching, weight = 0.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("to") [menu = Image > Overlay > To ROI Manager, weight = 5.0]
[DEBUG] - ij.plugin.filter.XYWriter [menu = File > Save As > XY Coordinates..., weight = 14.0]
[DEBUG] - JRuby.JRuby_Interpreter [menu = Plugins > Scripting > JRuby Interpreter, weight = 8.0]
[DEBUG] - ij.plugin.GelAnalyzer("options") [menu = Analyze > Gels > Gel Analyzer Options..., weight = 6.0]
[DEBUG] - ij.plugin.filter.EDM("points") [menu = Process > Binary > Ultimate Points, weight = 40.0]
[DEBUG] - ij.plugin.FileInfoVirtualStack [menu = File > Import > TIFF Virtual Stack..., weight = 9.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Filters("smooth") [menu = Process > Smooth, weight = 0.0]
[DEBUG] - ij.plugin.filter.Analyzer("clear") [menu = Analyze > Clear Results, weight = 5.0]
[DEBUG] - QuickPALM.Save_particles_table2img [menu = Analyze > QuickPALM > Save Particles (.tif file - fast), weight = 37.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Compiler("options") [menu = Edit > Options > Compiler..., weight = 13.0]
[DEBUG] - ij.plugin.GelAnalyzer("first") [menu = Analyze > Gels > Select First Lane, weight = 0.0]
[DEBUG] - ij.plugin.Scaler [menu = Image > Scale..., weight = 30.0]
[DEBUG] - Jython.Refresh_Jython_Scripts [menu = Plugins > Scripting > Refresh Jython Scripts, weight = 1.0]
[DEBUG] - ij.plugin.ScaleBar [menu = Analyze > Tools > Scale Bar..., weight = 5.0]
[DEBUG] - Stitching_3D [menu = Plugins > Stitching > deprecated > 3D Stitching, weight = 1.0]
[DEBUG] - mpicbg.ij.clahe.PlugIn [menu = Process > Enhance Local Contrast (CLAHE), weight = 35.0]
[DEBUG] - video2.Move_Roi [menu = Image > Video Editing > Move Roi, weight = 8.0]
[DEBUG] - ij3d.segmentation.Blob_Segmentation_in_3D [menu = Plugins > Segmentation > Segment blob in 3D Viewer, weight = 6.0]
[DEBUG] - CLI.CLI_ [menu = Plugins > Scripting > Macro Interpreter, weight = 2.0]
[DEBUG] - ij.plugin.StackReducer [menu = Image > Stacks > Tools  > Reduce..., weight = 2.0]
[DEBUG] - RGBtoYUV_ [menu = Image > Color > RGBtoYUV , weight = 35.0]
[DEBUG] - ij.plugin.URLOpener("t1-head.zip") [menu = File > Open Samples > T1 Head (2.4M, 16-bits), weight = 27.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("ice") [menu = Image > Lookup Tables > Ice, weight = 14.0]
[DEBUG] - SplineDeformationGenerator.SplineDeformationGenerator_ [menu = Plugins > Transform > Spline Deformation Generator, weight = 9.0]
[DEBUG] - tracing.Simple_Neurite_Tracer [menu = Plugins > Segmentation > Simple Neurite Tracer, weight = 10.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Selection("add") [menu = Edit > Selection > Add to Manager, weight = 32.0]
[DEBUG] - fiji.scripting.Script_Editor [menu = File > New > Script, weight = 15.0]
[DEBUG] - fiji.help.Context_Help [menu = Help > Help on Menu Item, weight = 57.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Hotkeys("install") [menu = Plugins > Shortcuts > Create Shortcut... , weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.ImageJ_Updater [menu = Help > Update ImageJ..., weight = 29.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("sqrt") [menu = Process > Math > Square Root, weight = 14.0]
[DEBUG] - ij.plugin.NewPlugin("text") [menu = File > New > Text Window, weight = 2.0]
[DEBUG] - ij.plugin.NewPlugin("filter") [menu = Plugins > New  > Plugin Filter, weight = 14.0]
[DEBUG] - ij.plugin.URLOpener("hela-cells.zip") [menu = File > Open Samples > HeLa Cells (1.3M, 48-bit RGB), weight = 16.0]
[DEBUG] - ij.plugin.URLOpener("cache") [menu = File > Open Samples > Cache Sample Images , weight = 41.0]
[DEBUG] - ij.plugin.Macro_Runner("Utilities/Close_All_Without_Saving.txt") [menu = Plugins > Utilities > Close All Without Saving, weight = 1.0]
[DEBUG] - ij.plugin.filter.EDM("voronoi") [menu = Process > Binary > Voronoi, weight = 42.0]
[DEBUG] - video2.Duplicate_Frame [menu = Image > Video Editing > Duplicate Frame, weight = 3.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("sub") [menu = Process > Math > Subtract..., weight = 1.0]
[DEBUG] - plugin.Stitching_Grid [menu = Plugins > Stitching > Grid/Collection stitching, weight = 1.0]
[DEBUG] - fiji.scripting.Script_Editor [menu = Plugins > Scripting > Script Editor, weight = 4.0]
[DEBUG] - fiji.plugin.Apply_External_Transformation [menu = Plugins > SPIM Registration > Utilities > Apply external transformation, weight = 0.0]
[DEBUG] - loci.plugins.LociExporter("") [menu = Plugins > Bio-Formats > Bio-Formats Exporter, weight = 1.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/TrakEM2_Example_Scripts/extract_stack_under_arealist.py") [menu = Plugins > Examples > TrakEM2_Example_Scripts > extract stack under arealist, weight = 4.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("spectrum") [menu = Image > Lookup Tables > Spectrum, weight = 15.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("abs") [menu = Process > Math > Abs, weight = 17.0]
[DEBUG] - ij.plugin.URLOpener("bridge.gif") [menu = File > Open Samples > Bridge (174K), weight = 5.0]
[DEBUG] - ij.plugin.Compiler("edit") [menu = Plugins > Macros > Edit..., weight = 2.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Orthogonal_Views [menu = Image > Stacks > Orthogonal Views, weight = 19.0]
[DEBUG] - IsoData_Classifier [menu = Analyze > Classification > IsoData Classifier, weight = 0.0]
[DEBUG] - QuickPALM.Run_MyMacro("Sort_particles.txt") [menu = Analyze > QuickPALM > Sort Particles by frame (in a .tif particle table file), weight = 38.0]
[DEBUG] - io.LSS16_Reader [menu = File > Import > LSS16..., weight = 54.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Translator [menu = Image > Transform > Translate..., weight = 6.0]
[DEBUG] - ij.plugin.URLOpener("m51.zip") [menu = File > Open Samples > M51 Galaxy (177K, 16-bits), weight = 22.0]
[DEBUG] - bunwarpj.bUnwarpJ_ [menu = Plugins > Registration > bUnwarpJ, weight = 7.0]
[DEBUG] - process3d.Gradient_ [menu = Plugins > Process > Gradient (3D), weight = 15.0]
[DEBUG] - loci.plugins.shortcut.ShortcutPanel("") [menu = Plugins > Bio-Formats > Bio-Formats Plugins Shortcut Window, weight = 37.0]
[DEBUG] - ij.plugin.frame.PasteController [menu = Edit > Paste Control..., weight = 15.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("gamma") [menu = Process > Math > Gamma..., weight = 9.0]
[DEBUG] - view5d.View5D_ [menu = Plugins > Analyze > View5D , weight = 1.0]
[DEBUG] - process3d.Rebin_ [menu = Plugins > Process > Rebin (3D), weight = 23.0]
[DEBUG] - About_RATS [menu = Help > About Plugins > Robust Automatic Threshold Selection , weight = 31.0]
[DEBUG] - [BLACKLISTED] ij.plugin.frame.ColorPicker [menu = Image > Color > Color Picker..., weight = 19.0]
[DEBUG] - ij.plugin.filter.ImageProperties [menu = Image > Properties..., weight = 13.0]
[DEBUG] - SIFT_Align [menu = Plugins > Registration > Linear Stack Alignment with SIFT, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Options("line") [menu = Edit > Options > Line Width..., weight = 0.0]
[DEBUG] - Transform_Roi [menu = Plugins > Transform > Landmark Correspondences, weight = 6.0]
[DEBUG] - ij.plugin.Filters3D("mean") [menu = Process > Filters > Mean 3D..., weight = 20.0]
[DEBUG] - ij.plugin.SimpleCommands("table") [menu = File > Import > Table... , weight = 6.0]
[DEBUG] - FJ_Statistics [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Statistics, weight = 6.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("start") [menu = Image > Stacks > Tools  > Start Animation [\], weight = 20.0]
[DEBUG] - ij.plugin.filter.Analyzer [menu = Analyze > Measure, weight = 0.0]
[DEBUG] - fiji.selection.Binary_to_Point_Selection [menu = Edit > Selection > Points from Mask, weight = 47.0]
[DEBUG] - ij.plugin.URLOpener("Rat_Hippocampal_Neuron.zip") [menu = File > Open Samples > Neuron (1.6M, 5 channels), weight = 23.0]
[DEBUG] - Helmholtz_Analysis [menu = Analyze > Helmholtz Analysis, weight = 36.0]
[DEBUG] - ij.plugin.filter.UnsharpMask [menu = Process > Filters > Unsharp Mask..., weight = 6.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/batch_convert_any_to_tif.txt") [menu = Plugins > Macros > batch convert any to tif, weight = 5.0]
[DEBUG] - ij.plugin.SimpleCommands("rtoi") [menu = Image > Transform > Results to Image, weight = 19.0]
[DEBUG] - GrayMorphology_("about") [menu = Help > About Plugins > Gray Morphology..., weight = 37.0]
[DEBUG] - RJ_Gamma [menu = Process > Noise > RandomJ > RandomJ Gamma, weight = 2.0]
[DEBUG] - Stack_to_Image5D("") [menu = Plugins > Image5D > Stack to Image5D, weight = 16.0]
[DEBUG] - ij.plugin.filter.Binary("fill") [menu = Process > Binary > Fill Holes, weight = 27.0]
[DEBUG] - ij.plugin.filter.Analyzer("sum") [menu = Analyze > Summarize, weight = 2.0]
[DEBUG] - fiji.plugin.trackmate.TrackMatePlugIn_ [menu = Plugins > Tracking > TrackMate, weight = 1.0]
[DEBUG] - io.DM3_Reader [menu = File > Import > DM3 Reader..., weight = 48.0]
[DEBUG] - ij.plugin.GelAnalyzer("label") [menu = Analyze > Gels > Label Peaks, weight = 5.0]
[DEBUG] - ij.plugin.Histogram [menu = Analyze > Histogram, weight = 19.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.ProxySettings [menu = Edit > Options > Proxy Settings..., weight = 12.0]
[DEBUG] - FJ_Edges [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Edges, weight = 1.0]
[DEBUG] - ij.plugin.URLOpener("Tree_Rings.jpg") [menu = File > Open Samples > Tree Rings (48K), weight = 30.0]
[DEBUG] - UnwarpJ_ [menu = Plugins > Registration > UnwarpJ, weight = 9.0]
[DEBUG] - Time_Stamper [menu = Image > Stacks > Time Stamper, weight = 38.0]
[DEBUG] - landmarks.Name_Points [menu = Plugins > Landmarks > Name Landmarks and Register, weight = 0.0]
[DEBUG] - io.Open_DAT_EMMENU [menu = File > Import > DAT EMMENU ..., weight = 47.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("southeast") [menu = Process > Shadows > Southeast, weight = 3.0]
[DEBUG] - ij.plugin.FFT("inverse") [menu = Process > FFT > Inverse FFT, weight = 1.0]
[DEBUG] - ij.plugin.filter.EDM("watershed") [menu = Process > Binary > Watershed, weight = 41.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("exp") [menu = Process > Math > Exp, weight = 12.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Options("io") [menu = Edit > Options > Input/Output..., weight = 1.0]
[DEBUG] - LSM_Reader [menu = File > Import > LSM..., weight = 39.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Binary("dilate") [menu = Process > Binary > Dilate, weight = 13.0]
[DEBUG] - ij.plugin.filter.FractalBoxCounter [menu = Analyze > Tools > Fractal Box Count..., weight = 1.0]
[DEBUG] - Colocalisation_Threshold [menu = Analyze > Colocalization > Colocalization Threshold, weight = 0.0]
[DEBUG] - ij.plugin.filter.Writer("png") [menu = File > Save As > PNG..., weight = 9.0]
[DEBUG] - ij.plugin.Commands("startup") [menu = Plugins > Macros > Startup Macros..., weight = 3.0]
[DEBUG] - QuickPALM.Reconstruct_Dataset [menu = Analyze > QuickPALM > Reconstruct Dataset, weight = 2.0]
[DEBUG] - ij.plugin.NewPlugin("text+dialog") [menu = Plugins > New  > Text Window..., weight = 27.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("from") [menu = Image > Overlay > From ROI Manager, weight = 4.0]
[DEBUG] - Colour_Deconvolution [menu = Image > Color > Colour Deconvolution, weight = 30.0]
[DEBUG] - fiji.plugin.Multi_View_Fusion [menu = Plugins > SPIM Registration > Multi-view fusion, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Memory [menu = Edit > Options > Memory & Threads..., weight = 11.0]
[DEBUG] - mpicbg.ij.plugin.Mean [menu = Plugins > Integral Image Filters > Mean, weight = 0.0]
[DEBUG] - ij.plugin.Selection("properties") [menu = Edit > Selection > Properties... , weight = 21.0]
[DEBUG] - ij.plugin.TextWriter [menu = File > Save As > Text..., weight = 16.0]
[DEBUG] - ij.plugin.Concatenator [menu = Image > Stacks > Tools  > Concatenate..., weight = 1.0]
[DEBUG] - VIB_Protocol [menu = Plugins > Analyze > VIB Protocol, weight = 4.0]
[DEBUG] - Image5D_Extensions("") [menu = Plugins > Image5D > Image5D Extensions, weight = 57.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.SaltAndPepper [menu = Process > Noise > Salt and Pepper, weight = 2.0]
[DEBUG] - FJ_Hessian [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Hessian, weight = 2.0]
[DEBUG] - New_Image5D("") [menu = Plugins > Image5D > New Image5D, weight = 0.0]
[DEBUG] - TJ_Crop [menu = Plugins > Transform > TransformJ > TransformJ Crop, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Benchmark [menu = Plugins > Utilities > Benchmark, weight = 29.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("fire") [menu = Image > Lookup Tables > Fire, weight = 12.0]
[DEBUG] - ToAST25_ [menu = Plugins > Tracking > ToAST, weight = 4.0]
[DEBUG] - util.Histogram_2D [menu = Plugins > Analyze > 2D Histogram, weight = 5.0]
[DEBUG] - Set_Channel_Labels("") [menu = Plugins > Image5D > Set Channel Labels, weight = 32.0]
[DEBUG] - FJ_Website [menu = Help > About Plugins > FeatureJ..., weight = 33.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/The_Hue_Game.bsh") [menu = Plugins > Examples > The Hue Game, weight = 13.0]
[DEBUG] - vib.RigidRegistration_ [menu = Plugins > Registration > Rigid Registration, weight = 3.0]
[DEBUG] - io.XPM_Writer [menu = File > Save As > XPM ..., weight = 37.0]
[DEBUG] - loci.plugins.LociImporter("location=[Internet]") [menu = Plugins > Bio-Formats > Bio-Formats Remote Importer, weight = 12.0]
[DEBUG] - stacks.Three_Pane_Crop [menu = Plugins > Stacks > Crop (3D), weight = 0.0]
[DEBUG] - volumeCalculator.Volume_Calculator [menu = Plugins > Analyze > Volume Calculator, weight = 10.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.frame.SyncWindows [menu = Analyze > Tools > Synchronize Windows, weight = 7.0]
[DEBUG] - ij.plugin.filter.Writer("pgm") [menu = File > Save As > PGM..., weight = 10.0]
[DEBUG] - ij.plugin.NewPlugin("plugin") [menu = Plugins > New  > Plugin, weight = 13.0]
[DEBUG] - FJ_Laplacian [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Laplacian, weight = 3.0]
[DEBUG] - io.IPLab_Reader [menu = File > Import > IPLab Reader..., weight = 55.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Info [menu = Image > Show Info..., weight = 12.0]
[DEBUG] - Align_Image [menu = Plugins > Registration > Align Image by line ROI, weight = 2.0]
[DEBUG] - [BLACKLISTED] fiji.updater.Updater("update") [menu = Help > Update Fiji, weight = 55.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Clipboard("scopy") [menu = Edit > Copy to System, weight = 13.0]
[DEBUG] - ij.plugin.Commands("undo") [menu = Edit > Undo, weight = 0.0]
[DEBUG] - Sync_Measure_3D("about") [menu = Help > About Plugins > Sync Measure 3D..., weight = 29.0]
[DEBUG] - ij.plugin.URLOpener("t1-rendering.zip") [menu = File > Open Samples > T1 Head Renderings (736K), weight = 28.0]
[DEBUG] - ij.plugin.LutLoader [menu = File > Import > LUT... , weight = 2.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Filters("edge") [menu = Process > Find Edges, weight = 2.0]
[DEBUG] - ij.plugin.SimpleCommands("set") [menu = Image > Stacks > Tools  > Set Label..., weight = 8.0]
[DEBUG] - process3d.Distance_Transform_3D [menu = Plugins > Process > Distance Transform 3D, weight = 3.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Profiler("set") [menu = Edit > Options > Profile Plot Options..., weight = 3.0]
[DEBUG] - FJ_Derivatives [menu = Plugins > Feature Extraction > FeatureJ > FeatureJ Derivatives, weight = 0.0]
[DEBUG] - io.Extract_Images_From_PDF [menu = File > Import > Extract Images From PDF..., weight = 46.0]
[DEBUG] - SPIM_Registration [menu = Plugins > SPIM Registration > deprecated > Registration, weight = 0.0]
[DEBUG] - JRuby.Refresh_JRuby_Scripts [menu = Plugins > Scripting > Refresh JRuby Scripts, weight = 9.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Zoom("orig") [menu = Image > Zoom > Original Scale, weight = 2.0]
[DEBUG] - ij.plugin.StackWriter [menu = File > Save As > Image Sequence... , weight = 6.0]
[DEBUG] - ij.plugin.Selection("interpolate") [menu = Edit > Selection > Interpolate, weight = 6.0]
[DEBUG] - ij.plugin.filter.Writer("gif") [menu = File > Save As > Gif..., weight = 1.0]
[DEBUG] - ij.plugin.URLOpener("mri-stack.zip") [menu = File > Open Samples > MRI Stack (528K), weight = 21.0]
[DEBUG] - net.sf.ij.plugin.ImageIOOpenPlugin("simple") [menu = File > Import > Open [Image IO], weight = 63.0]
[DEBUG] - ij.plugin.Selection("hull") [menu = Edit > Selection > Convex Hull, weight = 7.0]
[DEBUG] - QuickPALM.Create_3D_calibration [menu = Analyze > QuickPALM > Create 3D calibration (requires astigmatism), weight = 13.0]
[DEBUG] - customnode.Mesh_Maker [menu = Plugins > Examples > Spheres and Tubes in 3D, weight = 11.0]
[DEBUG] - Set_Channel_Display("") [menu = Plugins > Image5D > Set Channel Display, weight = 31.0]
[DEBUG] - ij.plugin.URLOpener("gel.gif") [menu = File > Open Samples > Gel (105K), weight = 15.0]
[DEBUG] - fiji.Wiki_Editor("news") [menu = Plugins > Utilities > Fiji > New Fiji News, weight = 0.0]
[DEBUG] - ij.plugin.filter.ParticleAnalyzer [menu = Analyze > Analyze Particles..., weight = 1.0]
[DEBUG] - util.Find_Connected_Regions [menu = Plugins > Process > Find Connected Regions, weight = 9.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Selection("none") [menu = Edit > Selection > Select None, weight = 1.0]
[DEBUG] - TJ_Panel [menu = Plugins > Transform > TransformJ > TransformJ Panel, weight = 6.0]
[DEBUG] - Show_Label_Centers [menu = Plugins > Process > Show label centers, weight = 6.0]
[DEBUG] - ij.plugin.filter.MaximumFinder [menu = Process > Find Maxima..., weight = 3.0]
[DEBUG] - ij.plugin.NewPlugin("frame") [menu = Plugins > New  > Plugin Frame, weight = 15.0]
[DEBUG] - video2.New_Video [menu = Image > Video Editing > New Video, weight = 0.0]
[DEBUG] - ij.plugin.filter.RankFilters("despeckle") [menu = Process > Noise > Despeckle, weight = 13.0]
[DEBUG] - Kalman_Filter [menu = Image > Stacks > Kalman Stack Filter, weight = 42.0]
[DEBUG] - Clean_Up_Local_Thickness("run") [menu = Analyze > Local Thickness > Local Thickness to Cleaned-Up Local Thickness, weight = 4.0]
[DEBUG] - io.Animated_Gif_Reader [menu = File > Import > Animated Gif..., weight = 56.0]
[DEBUG] - io.Open_DF3 [menu = File > Import > DF3..., weight = 42.0]
[DEBUG] - RJ_Options [menu = Process > Noise > RandomJ > RandomJ Options, weight = 4.0]
[DEBUG] - SheppLogan_ [menu = File > Open Samples > Shepp-Logan Phantom (Plugin), weight = 55.0]
[DEBUG] - Sholl_Utils("about") [menu = Help > About Plugins > About Sholl Analysis..., weight = 26.0]
[DEBUG] - Clojure.Clojure_Interpreter [menu = Plugins > Scripting > Clojure Interpreter, weight = 11.0]
[DEBUG] - emblcmci.BleachCorrection [menu = Image > Adjust > Bleach Correction, weight = 19.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.ImageCalculator [menu = Process > Image Calculator..., weight = 22.0]
[DEBUG] - Colocalisation_Test [menu = Analyze > Colocalization > Colocalization Test, weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Converter("32-bit") [menu = Image > Type > 32-bit, weight = 2.0]
[DEBUG] - ij.plugin.XY_Reader [menu = File > Import > XY Coordinates... , weight = 11.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.CommandFinder [menu = Plugins > Utilities > Find Commands..., weight = 1.0]
[DEBUG] - video2.Insert_Stack [menu = Image > Video Editing > Insert Stack, weight = 4.0]
[DEBUG] - ij.plugin.Installer [menu = Plugins > Shortcuts > Install Plugin..., weight = 2.0]
[DEBUG] - io.SVG_Reader [menu = File > Import > SVG..., weight = 53.0]
[DEBUG] - fiji.process3d.SEDT [menu = Plugins > Process > Exact Signed Euclidean Distance Transform (3D), weight = 35.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Options("misc") [menu = Edit > Options > Misc..., weight = 15.0]
[DEBUG] - loci.plugins.Updater("") [menu = Plugins > Bio-Formats > Update Bio-Formats Plugins, weight = 48.0]
[DEBUG] - fiji.process3d.EDT [menu = Plugins > Process > Exact Euclidean Distance Transform (3D), weight = 34.0]
[DEBUG] - ij.plugin.RoiScaler [menu = Edit > Selection > Scale... , weight = 22.0]
[DEBUG] - ij.plugin.Hotkeys("remove") [menu = Plugins > Shortcuts > Remove..., weight = 3.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/compose_rgb-stacks.bsh") [menu = Plugins > Examples > compose rgb-stacks, weight = 16.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Transformer("left") [menu = Image > Transform > Rotate 90 Degrees Left, weight = 4.0]
[DEBUG] - SIFT_ExtractPointRoi [menu = Plugins > Feature Extraction > Extract SIFT Correspondences, weight = 0.0]
[DEBUG] - fiji.plugin.Bead_Registration [menu = Plugins > SPIM Registration > Bead-based registration, weight = 0.0]
[DEBUG] - ij.plugin.URLOpener("particles.gif") [menu = File > Open Samples > Particles (75K), weight = 26.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.GaussianBlur [menu = Process > Filters > Gaussian Blur..., weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.StackEditor("add") [menu = Image > Stacks > Add Slice, weight = 0.0]
[DEBUG] - io.ICO_Writer [menu = File > Save As > ICO ..., weight = 35.0]
[DEBUG] - TJ_Website [menu = Help > About Plugins > TransformJ..., weight = 22.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("set") [menu = Process > Math > Set..., weight = 10.0]
[DEBUG] - ij.plugin.filter.LineGraphAnalyzer [menu = Analyze > Tools > Analyze Line Graph, weight = 2.0]
[DEBUG] - Analyze_Writer [menu = File > Save As > Analyze... , weight = 32.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("southwest") [menu = Process > Shadows > Southwest, weight = 5.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/chess_.py") [menu = Plugins > Examples > chess , weight = 15.0]
[DEBUG] - ij.plugin.NewPlugin("plugin-tool") [menu = Plugins > New  > Plugin Tool, weight = 16.0]
[DEBUG] - org.openmicroscopy.shoola.MainIJPlugin [menu = Plugins > OMERO > Connect to OMERO, weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Filler("fill") [menu = Edit > Fill, weight = 28.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/CoverMaker/Cover_Maker.py") [menu = Plugins > Examples > CoverMaker > Cover Maker, weight = 0.0]
[DEBUG] - Stack_Splitter [menu = Image > Stacks > Tools  > Stack Splitter, weight = 36.0]
[DEBUG] - QuickPALM.Run_MyMacro("About_.txt") [menu = Analyze > QuickPALM > About..., weight = 50.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.SimpleCommands("fonts") [menu = Edit > Options > Fonts..., weight = 2.0]
[DEBUG] - registration3d.Fast_FourierTransform [menu = Plugins > Process > Fast FFT (2D/3D), weight = 26.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/macros/") [menu = Help > Macros..., weight = 17.0]
[DEBUG] - Transform_Rigid [menu = Plugins > Transform > Interactive Rigid, weight = 0.0]
[DEBUG] - ij.plugin.filter.Binary("outline") [menu = Process > Binary > Outline, weight = 26.0]
[DEBUG] - QuickPALM.Run_MyMacro("Fast_VirtualStack_Opener.txt") [menu = Analyze > QuickPALM > Fast VirtualStack Opener, weight = 35.0]
[DEBUG] - ij.plugin.filter.RankFilters("masks") [menu = Process > Filters > Show Circular Masks..., weight = 34.0]
[DEBUG] - TJ_Turn [menu = Plugins > Transform > TransformJ > TransformJ Turn, weight = 10.0]
[DEBUG] - ij.plugin.Selection("from") [menu = Edit > Selection > Create Selection, weight = 9.0]
[DEBUG] - io.Icns_Reader [menu = File > Import > Icns..., weight = 52.0]
[DEBUG] - ij.plugin.SimpleCommands("itor") [menu = Image > Transform > Image to Results, weight = 18.0]
[DEBUG] - SPIM_Registration_File [menu = Plugins > SPIM Registration > deprecated > Advanced Registration, weight = 1.0]
[DEBUG] - ij.plugin.URLOpener("AuPbSn40.jpg") [menu = File > Open Samples > AuPbSn 40 (56K), weight = 0.0]
[DEBUG] - Dichromacy_ [menu = Image > Color > Simulate Color Blindness, weight = 37.0]
[DEBUG] - Visual_Grep [menu = Plugins > Analyze > Visual grep, weight = 6.0]
[DEBUG] - GrayMorphology_ [menu = Process > Morphology > Gray Morphology, weight = 0.0]
[DEBUG] - MTrackJ_ [menu = Plugins > Tracking > MTrackJ, weight = 0.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Duplicator [menu = Image > Duplicate..., weight = 28.0]
[DEBUG] - ij.plugin.SimpleCommands("remove") [menu = Image > Stacks > Tools  > Remove Slice Labels, weight = 9.0]
[DEBUG] - ij.plugin.frame.ContrastAdjuster("wl") [menu = Image > Adjust > Window/Level..., weight = 1.0]
[DEBUG] - io.Nrrd_Reader [menu = File > Import > Nrrd ..., weight = 50.0]
[DEBUG] - RGB_to_CIELAB [menu = Image > Color > RGB to CIELAB, weight = 32.0]
[DEBUG] - mpicbg.ij.plugin.PMCCBlockFlow [menu = Plugins > Optic Flow > Integral Block PMCC, weight = 2.0]
[DEBUG] - fiji.plugin.volumeviewer.Volume_Viewer [menu = Plugins > Volume Viewer, weight = 42.0]
[DEBUG] - ij.plugin.HyperStackMaker [menu = Image > Hyperstacks > New Hyperstack..., weight = 0.0]
[DEBUG] - ij.plugin.filter.RankFilters("variance") [menu = Process > Filters > Variance..., weight = 7.0]
[DEBUG] - ij.plugin.HyperStackReducer [menu = Image > Hyperstacks > Reduce Dimensionality..., weight = 3.0]
[DEBUG] - CollectGarbage_ [menu = Plugins > Utilities > Collect Garbage, weight = 3.0]
[DEBUG] - [BLACKLISTED, OVERRIDDEN] ij.plugin.LutLoader("3-3-2 RGB") [menu = Image > Lookup Tables > 3-3-2 RGB, weight = 16.0]
[WARNING] Overridden plugin ij.plugin.LutLoader("3-3-2 RGB") is blacklisted
[DEBUG] - MC_Test [menu = Plugins > Utilities > Debugging > Test Marching Cubes, weight = 0.0]
[DEBUG] - process3d.Laplace_ [menu = Plugins > Process > Laplace (3D), weight = 17.0]
[DEBUG] - io.ICO_Reader [menu = File > Import > ICO..., weight = 51.0]
[DEBUG] - FindIt_ [menu = Plugins > Analyze > Find differences, weight = 2.0]
[DEBUG] - Jython.Jython_Interpreter [menu = Plugins > Scripting > Jython Interpreter, weight = 0.0]
[DEBUG] - ij.plugin.filter.Analyzer("set") [menu = Analyze > Set Measurements..., weight = 6.0]
[DEBUG] - RJ_Binomial [menu = Process > Noise > RandomJ > RandomJ Binomial, weight = 0.0]
[DEBUG] - ij.plugin.EventListener [menu = Plugins > Utilities > Monitor Events..., weight = 3.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/docs") [menu = Help > Documentation..., weight = 2.0]
[DEBUG] - Sync_Measure_3D("") [menu = Analyze > Tools > Sync Measure 3D, weight = 20.0]
[DEBUG] - ij.plugin.Straightener [menu = Edit > Selection > Straighten..., weight = 27.0]
[DEBUG] - io.Open_MRC_Leginon [menu = File > Import > MRC Leginon ..., weight = 44.0]
[DEBUG] - [BLACKLISTED, OVERRIDDEN] ij.plugin.Commands("quit") [menu = File > Quit, weight = 43.0]
[WARNING] Overridden plugin ij.plugin.Commands("quit") is blacklisted
[DEBUG] - ij.plugin.Projector [menu = Image > Stacks > 3D Project..., weight = 21.0]
[DEBUG] - Stitch_Image_Directory [menu = Plugins > Stitching > deprecated > Stitch Directory with Images (unknown configuration), weight = 5.0]
[DEBUG] - ij.plugin.Selection("mask") [menu = Edit > Selection > Create Mask, weight = 10.0]
[DEBUG] - Replace_Value [menu = Plugins > Process > Replace value, weight = 2.0]
[DEBUG] - ij.plugin.filter.RankFilters("nan") [menu = Process > Noise > Remove NaNs..., weight = 15.0]
[DEBUG] - ij.plugin.URLOpener("bat-cochlea-volume.zip") [menu = File > Open Samples > Bat Cochlea Volume (19K), weight = 1.0]
[DEBUG] - Manual_Tracking [menu = Plugins > Tracking > Manual Tracking, weight = 5.0]
[DEBUG] - QuickPALM.Correct_Drift2 [menu = Analyze > QuickPALM > Correct Particles Drift (based on ROI), weight = 24.0]
[DEBUG] - video2.Add_Empty_Frame [menu = Image > Video Editing > Add Empty Frame, weight = 2.0]
[DEBUG] - ij.plugin.Macro_Runner [menu = Plugins > Macros > Run..., weight = 1.0]
[DEBUG] - QuickPALM.Load_particles_tableFromImg [menu = File > Import > QuickPALM >  Load Particles (.tif file - fast), weight = 1.0]
[DEBUG] - trainableSegmentation.Weka_Segmentation [menu = Plugins > Segmentation > deprecated > Advanced Weka Segmentation, weight = 1.0]
[DEBUG] - ImageJ_3D_Viewer [menu = Plugins > 3D Viewer, weight = 16.0]
[DEBUG] - trainableSegmentation.Trainable_Segmentation [menu = Plugins > Segmentation > deprecated > Trainable Segmentation, weight = 0.0]
[DEBUG] - spimopener.SPIM_Opener [menu = File > Import > SPIM, weight = 58.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Extended_Profile_Plot.bsh") [menu = Plugins > Examples > Extended Profile Plot, weight = 5.0]
[DEBUG] - Dichromacy_ [menu = Image > Color > Dichromacy, weight = 36.0]
[DEBUG] - net.sf.ij.plugin.AboutImageIO("") [menu = Help > About Plugins > Image IO ..., weight = 36.0]
[DEBUG] - fiji.Wiki_Editor("screenshot") [menu = Plugins > Utilities > Fiji > New Fiji Wiki Screenshot, weight = 2.0]
[DEBUG] - ij.plugin.filter.Writer("fits") [menu = File > Save As > FITS..., weight = 11.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Zoom("out") [menu = Image > Zoom > Out [-], weight = 1.0]
[DEBUG] - ij.plugin.URLOpener("TEM_filter_sample.jpg") [menu = File > Open Samples > TEM Filter (112K), weight = 29.0]
[DEBUG] - loci.plugins.LociImporter("location=[Local machine] windowless=true ") [menu = Plugins > Bio-Formats > Bio-Formats Windowless Importer, weight = 13.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Binary("open") [menu = Process > Binary > Open, weight = 14.0]
[DEBUG] - MTrackJ_Website [menu = Help > About Plugins > MTrackJ..., weight = 23.0]
[DEBUG] - loci.plugins.config.LociConfig("") [menu = Plugins > Bio-Formats > Bio-Formats Plugins Configuration, weight = 36.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Filters("noise") [menu = Process > Noise > Add Specified Noise..., weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("red") [menu = Image > Lookup Tables > Red, weight = 17.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("green") [menu = Image > Lookup Tables > Green, weight = 18.0]
[DEBUG] - io.PDF_Viewer [menu = File > Import > PDF ..., weight = 45.0]
[DEBUG] - ini.trakem2.New_Project("amira") [menu = File > Import > Amira as TrakEM2..., weight = 61.0]
[DEBUG] - ij.plugin.NewPlugin("table") [menu = Plugins > New  > Table..., weight = 28.0]
[DEBUG] - Transform_Similarity [menu = Plugins > Transform > Interactive Similarity, weight = 1.0]
[DEBUG] - ij.plugin.filter.RankFilters("median") [menu = Process > Filters > Median..., weight = 2.0]
[DEBUG] - fiji.plugin.Multi_View_Deconvolution [menu = Plugins > SPIM Registration > Multi-view deconvolution, weight = 2.0]
[DEBUG] - loci.plugins.About("") [menu = Help > About Plugins > Bio-Formats Plugins..., weight = 21.0]
[DEBUG] - Stack_Sorter [menu = Image > Stacks > Tools  > Stack Sorter, weight = 35.0]
[DEBUG] - Javascript.Javascript_Interpreter [menu = Plugins > Scripting > Javascript Interpreter, weight = 6.0]
[DEBUG] - QuickPALM.Stop_processing [menu = Analyze > QuickPALM > Stop Analyse Particles (kills the threads), weight = 1.0]
[DEBUG] - TJ_Options [menu = Plugins > Transform > TransformJ > TransformJ Options, weight = 5.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Fiji_Logo_3D.js") [menu = Plugins > Examples > Fiji Logo 3D, weight = 7.0]
[DEBUG] - ij.plugin.Selection("circle") [menu = Edit > Selection > Fit Circle, weight = 4.0]
[DEBUG] - video2.Make_Transition [menu = Image > Video Editing > Make Transition, weight = 6.0]
[DEBUG] - fiji.analyze.directionality.Directionality_ [menu = Analyze > Directionality, weight = 44.0]
[DEBUG] - Z_Project("") [menu = Plugins > Image5D > Z Project, weight = 44.0]
[DEBUG] - mpicbg.ij.plugin.StandardDeviation [menu = Plugins > Integral Image Filters > Standard Deviation, weight = 2.0]
[DEBUG] - ij.plugin.URLOpener("LineGraph.jpg") [menu = File > Open Samples > Line Graph (21K), weight = 19.0]
[DEBUG] - ij.plugin.FolderOpener [menu = File > Import > Image Sequence..., weight = 0.0]
[DEBUG] - _3D_OC_Options [menu = Analyze > 3D OC Options, weight = 47.0]
[DEBUG] - ij.plugin.MacroInstaller [menu = Plugins > Macros > Install..., weight = 0.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("hide") [menu = Image > Overlay > Hide Overlay, weight = 2.0]
[DEBUG] - Make_Montage("") [menu = Plugins > Image5D > Make Montage, weight = 43.0]
[DEBUG] - util.Mask_Of_Nearby_Points [menu = Plugins > Process > Mask Of Nearby Points, weight = 8.0]
[DEBUG] - video2.Open_Video [menu = Image > Video Editing > Open Video, weight = 1.0]
[DEBUG] - Retinex_ [menu = Image > Color > Retinex, weight = 38.0]
[DEBUG] - ij.plugin.URLOpener("embryos.jpg") [menu = File > Open Samples > Embryos (42K), weight = 12.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Zoom("set") [menu = Image > Zoom > Set... , weight = 6.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Binary("erode") [menu = Process > Binary > Erode, weight = 12.0]
[DEBUG] - LSM_Toolbox("about") [menu = Help > About Plugins > LSMToolbox..., weight = 32.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/developer/index.html") [menu = Help > Dev. Resources..., weight = 15.0]
[DEBUG] - fiji.drawing.Linear_Gradient [menu = Image > Drawing > Linear Gradient, weight = 1.0]
[DEBUG] - ij.plugin.Macro_Runner("spiral/Batch_Process_Cellomics_Timeseries_Mosaics.bsh") [menu = Plugins > spiral > Batch Process Cellomics Timeseries Mosaics, weight = 1.0]
[DEBUG] - ij.plugin.URLOpener("ct.dcm.zip") [menu = File > Open Samples > CT (420K, 16-bit DICOM), weight = 10.0]
[DEBUG] - mpicbg.ij.plugin.SampleVariance [menu = Plugins > Integral Image Filters > Sample Variance, weight = 1.0]
[DEBUG] - loci.plugins.macro.LociFunctions("") [menu = Plugins > Bio-Formats > Bio-Formats Macro Extensions, weight = 14.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.BrowserLauncher [menu = Help > ImageJ Website..., weight = 0.0]
[DEBUG] - ij.plugin.Clipboard("cut") [menu = Edit > Cut, weight = 11.0]
[DEBUG] - fiji.geom.Shape_Index_Map [menu = Analyze > Shape Index Map, weight = 42.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("options") [menu = Image > Stacks > Tools  > Animation Options..., weight = 22.0]
[DEBUG] - ij.plugin.BatchProcessor [menu = Process > Batch > Macro... , weight = 2.0]
[DEBUG] - CLI.Refresh_Macros [menu = Plugins > Scripting > Refresh Macros, weight = 3.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("previous") [menu = Image > Stacks > Previous Slice [<], weight = 3.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.OverlayCommands("options") [menu = Image > Overlay > Overlay Options..., weight = 10.0]
[DEBUG] - Analyze_Reader [menu = File > Import > Analyze..., weight = 40.0]
[DEBUG] - ij.plugin.BrowserLauncher("https://list.nih.gov/archives/imagej.html") [menu = Help > Mailing List..., weight = 4.0]
[DEBUG] - Segmentation_Editor [menu = Plugins > Segmentation > Segmentation Editor, weight = 1.0]
[DEBUG] - ij.plugin.Compiler [menu = Plugins > Compile and Run..., weight = 4.0]
[DEBUG] - ij.plugin.NewPlugin("macro") [menu = Plugins > New  > Macro, weight = 0.0]
[DEBUG] - ij.plugin.Selection("inverse") [menu = Edit > Selection > Make Inverse, weight = 8.0]
[DEBUG] - plugin.Descriptor_based_series_registration [menu = Plugins > Registration > Descriptor-based series registration (2d/3d + t), weight = 12.0]
[DEBUG] - ij.plugin.NewPlugin("javascript") [menu = Plugins > New  > JavaScript, weight = 2.0]
[DEBUG] - Moving_Least_Squares [menu = Plugins > Registration > Moving Least Squares, weight = 4.0]
[DEBUG] - ij.plugin.SimpleCommands("display") [menu = Image > Color > Display LUTs, weight = 17.0]
[DEBUG] - ij.plugin.frame.LineWidthAdjuster [menu = Image > Adjust > Line Width... , weight = 7.0]
[DEBUG] - fiji.Wiki_Editor("tutorial-maker") [menu = Plugins > Utilities > Fiji > New Fiji Tutorial, weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.HyperStackConverter("hstostack") [menu = Image > Hyperstacks > Hyperstack to Stack, weight = 2.0]
[DEBUG] - ij.plugin.URLOpener("http://fiji.sc/samples/FakeTracks.tif") [menu = File > Open Samples > Tracks for TrackMate (807K), weight = 53.0]
[DEBUG] - fiji.debugging.Object_Inspector [menu = Plugins > Utilities > Fiji > Inspect Java Objects, weight = 4.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/CoverMaker/Prepare_Cover_Maker_Database.py") [menu = Plugins > Examples > CoverMaker > Prepare Cover Maker Database, weight = 1.0]
[DEBUG] - EDF_Expert_ [menu = Plugins > Process > Extended Depth of Field (Expert mode)..., weight = 33.0]
[DEBUG] - ij.plugin.GelAnalyzer("replot") [menu = Analyze > Gels > Re-plot Lanes, weight = 3.0]
[DEBUG] - ij.plugin.Clipboard("paste") [menu = Edit > Paste, weight = 14.0]
[DEBUG] - ij.plugin.filter.Binary("skel") [menu = Process > Binary > Skeletonize, weight = 28.0]
[DEBUG] - Distance_Ridge("run") [menu = Analyze > Local Thickness > Distance Map to Distance Ridge, weight = 2.0]
[DEBUG] - mpicbg.panorama.Panorama_View [menu = Plugins > Transform > Panorama equirectangular view, weight = 11.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Delayed_Snapshot.py") [menu = Plugins > Examples > Delayed Snapshot, weight = 2.0]
[DEBUG] - ij.plugin.Selection("band") [menu = Edit > Selection > Make Band..., weight = 25.0]
[DEBUG] - mpicbg.ij.plugin.MSEGaussianFlow [menu = Plugins > Optic Flow > Gaussian Window MSE, weight = 0.0]
[DEBUG] - ij.plugin.filter.Filler("clear") [menu = Edit > Clear, weight = 26.0]
[DEBUG] - util.RohlfingSBA [menu = Plugins > Process > Shape-Based Averaging (Experimental), weight = 24.0]
[DEBUG] - RJ_Poisson [menu = Process > Noise > RandomJ > RandomJ Poisson, weight = 6.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("grays") [menu = Image > Lookup Tables > Grays, weight = 13.0]
[DEBUG] - mpicbg.ij.plugin.BlockMatching_ExtractPoinRoi [menu = Plugins > Feature Extraction > Extract Block Matching Correspondences, weight = 2.0]
[DEBUG] - ij.plugin.SurfacePlotter [menu = Analyze > Surface Plot..., weight = 21.0]
[DEBUG] - TJ_Scale [menu = Plugins > Transform > TransformJ > TransformJ Scale, weight = 8.0]
[DEBUG] - Set_Position("") [menu = Plugins > Image5D > Set Position, weight = 30.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("div") [menu = Process > Math > Divide..., weight = 3.0]
[DEBUG] - RJ_Exponential [menu = Process > Noise > RandomJ > RandomJ Exponential, weight = 1.0]
[DEBUG] - ij.plugin.FFT("options") [menu = Process > FFT > FFT Options..., weight = 3.0]
[DEBUG] - loci.plugins.LociImporter("location=[Internet]") [menu = File > Import > Bio-Formats (Remote), weight = 33.0]
[DEBUG] - ij.plugin.Resizer [menu = Image > Adjust > Size..., weight = 5.0]
[DEBUG] - Compute_Curvatures [menu = Plugins > Analyze > Compute Curvatures, weight = 7.0]
[DEBUG] - ij.plugin.Profiler("plot") [menu = Analyze > Plot Profile, weight = 20.0]
[DEBUG] - AmiraMeshWriter_ [menu = File > Save As > AmiraMesh ..., weight = 27.0]
[DEBUG] - ij.plugin.NextImageOpener [menu = File > Open Next, weight = 2.0]
[DEBUG] - QuickPALM.Run_MyMacro("Update_.txt") [menu = Analyze > QuickPALM > Update QuickPALM, weight = 49.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.ScreenGrabber("image") [menu = Plugins > Utilities > Capture Image, weight = 16.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Multithreaded_Image_Processing_in_Javascript.js") [menu = Plugins > Examples > Multithreaded Image Processing in Javascript, weight = 10.0]
[DEBUG] - ij.plugin.GelAnalyzer("next") [menu = Analyze > Gels > Select Next Lane, weight = 1.0]
[DEBUG] - ij.plugin.filter.Printer("print") [menu = File > Print..., weight = 32.0]
[DEBUG] - ij.plugin.filter.ScaleDialog [menu = Analyze > Set Scale..., weight = 17.0]
[DEBUG] - ij.plugin.Selection("tobox") [menu = Edit > Selection > To Bounding Box, weight = 28.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.frame.ContrastAdjuster [menu = Image > Adjust > Brightness/Contrast..., weight = 0.0]
[DEBUG] - ColorHistogram_("about") [menu = Help > About Plugins > Color Histogram..., weight = 25.0]
[DEBUG] - ij.plugin.StackEditor("toimages") [menu = Image > Stacks > Stack to Images, weight = 16.0]
[DEBUG] - ij.plugin.filter.Convolver [menu = Process > Filters > Convolve..., weight = 0.0]
[DEBUG] - siox.Siox_Segmentation [menu = Plugins > Segmentation > SIOX: Simple Interactive Object Extraction, weight = 7.0]
[DEBUG] - mpicbg.ij.plugin.RemoveOutliers [menu = Plugins > Integral Image Filters > Remove Outliers, weight = 3.0]
[DEBUG] - I5D_about("about") [menu = Help > About Plugins > Image5D..., weight = 30.0]
[DEBUG] - ij.plugin.ThreadLister [menu = Plugins > Utilities > Threads..., weight = 28.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/About_Plugin_Macros.txt") [menu = Plugins > Macros > About Plugin Macros, weight = 0.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Find_Dimension_of_Raw_Image.py") [menu = Plugins > Examples > Find Dimension of Raw Image, weight = 8.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Fiji_Cube.ijm") [menu = Plugins > Examples > Fiji Cube, weight = 6.0]
[DEBUG] - video2.Delete_Frame [menu = Image > Video Editing > Delete Frame, weight = 5.0]
[DEBUG] - ij.plugin.filter.Calibrator [menu = Analyze > Calibrate..., weight = 18.0]
[DEBUG] - ij.plugin.ImagesToStack [menu = Image > Stacks > Images to Stack, weight = 15.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Converter("16-bit") [menu = Image > Type > 16-bit, weight = 1.0]
[DEBUG] - ij.plugin.filter.Printer("setup") [menu = File > Page Setup..., weight = 31.0]
[DEBUG] - Javascript.Refresh_Javascript_Scripts [menu = Plugins > Scripting > Refresh Javascript Scripts, weight = 7.0]
[DEBUG] - ij.plugin.URLOpener("NileBend.jpg") [menu = File > Open Samples > Nile Bend (1.9M), weight = 24.0]
[DEBUG] - io.FIBSEM_Reader [menu = File > Import > FIB-SEM ..., weight = 43.0]
[DEBUG] - ij.plugin.URLOpener("flybrain.zip") [menu = File > Open Samples > Fly Brain (1MB), weight = 14.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Binner [menu = Image > Transform > Bin..., weight = 7.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("revert") [menu = File > Revert, weight = 20.0]
[DEBUG] - Threshold_Colour [menu = Image > Adjust > Threshold Colour, weight = 18.0]
[DEBUG] - Sholl_Utils("sample") [menu = File > Open Samples > ddaC Neuron (84K), weight = 54.0]
[DEBUG] - net.sf.ij.plugin.ImageIOOpenPlugin("preview") [menu = File > Import > Open with preview ..., weight = 64.0]
[DEBUG] - ij.plugin.URLOpener("lena-std.tif") [menu = File > Open Samples > Lena (68K), weight = 18.0]
[DEBUG] - io.Gif_Stack_Writer [menu = File > Save As > Animated Gif ... , weight = 40.0]
[DEBUG] - Average_Color [menu = Image > Color > Average Color, weight = 31.0]
[DEBUG] - Reslice_Z [menu = Image > Stacks > Reslice Z, weight = 37.0]
[DEBUG] - fiji.plugin.trackmate.ManualTrackingPlugIn_ [menu = Plugins > Tracking > Manual tracking with TrackMate, weight = 3.0]
[DEBUG] - ij.plugin.FFT("fft") [menu = Process > FFT > FFT, weight = 0.0]
[DEBUG] - ij.plugin.frame.ContrastAdjuster("balance") [menu = Image > Adjust > Color Balance..., weight = 2.0]
[DEBUG] - ij.plugin.Raw [menu = File > Import > Raw..., weight = 1.0]
[DEBUG] - ij.plugin.SimpleCommands("rename") [menu = Image > Rename..., weight = 29.0]
[DEBUG] - Kuwahara_LinearStructure_Filter_v3 [menu = Process > Filters > Linear Kuwahara, weight = 45.0]
[DEBUG] - Bilateral_Filter [menu = Plugins > Process > Bilateral Filter, weight = 0.0]
[DEBUG] - ini.trakem2.New_Project [menu = File > New > TrakEM2 (from template), weight = 17.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Thresholder("mask") [menu = Process > Binary > Convert to Mask, weight = 1.0]
[DEBUG] - [BLACKLISTED] ij.plugin.HyperStackConverter("stacktohs") [menu = Image > Hyperstacks > Stack to Hyperstack..., weight = 1.0]
[DEBUG] - vib.Resample_ [menu = Plugins > Process > Resample, weight = 11.0]
[DEBUG] - Save_Image5D("") [menu = Plugins > Image5D > Save Image5D, weight = 2.0]
[DEBUG] - ij.plugin.filter.Filler("outside") [menu = Edit > Clear Outside, weight = 27.0]
[DEBUG] - plugin.Manual_Landmark_Selection [menu = Plugins > Registration > Manual landmark selection (3d), weight = 11.0]
[DEBUG] - TJ_Mirror [menu = Plugins > Transform > TransformJ > TransformJ Mirror, weight = 4.0]
[DEBUG] - ij.plugin.filter.Writer("zip") [menu = File > Save As > ZIP..., weight = 4.0]
[DEBUG] - trainableSegmentation.Weka_Segmentation [menu = Plugins > Segmentation > Trainable Weka Segmentation, weight = 2.0]
[DEBUG] - RJ_Website [menu = Help > About Plugins > RandomJ..., weight = 35.0]
[DEBUG] - ij.plugin.WindowOrganizer("imagej") [menu = Window > Main Window [return], weight = 1.0]
[DEBUG] - register_virtual_stack.Transform_Virtual_Stack_MT [menu = Plugins > Transform > Transform Virtual Stack Slices, weight = 8.0]
[DEBUG] - Snakuscule_ [menu = Plugins > Segmentation > Snakuscule, weight = 13.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("east") [menu = Process > Shadows > East, weight = 2.0]
[DEBUG] - ColorHistogram_ [menu = Analyze > Color Histogram, weight = 37.0]
[DEBUG] - Virtual_Image5D_Opener("") [menu = Plugins > Image5D > Virtual Image5D Opener, weight = 4.0]
[DEBUG] - ij.plugin.frame.ColorThresholder [menu = Image > Adjust > Color Threshold..., weight = 4.0]
[DEBUG] - skeleton_analysis.AnalyzeSkeleton_ [menu = Plugins > Skeleton > Analyze Skeleton (2D/3D), weight = 0.0]
[DEBUG] - ij.plugin.BatchMeasure [menu = Process > Batch > Measure..., weight = 0.0]
[DEBUG] - process3d.Erode_ [menu = Plugins > Process > Erode (3D), weight = 13.0]
[DEBUG] - SRM_ [menu = Plugins > Segmentation > Statistical Region Merging, weight = 12.0]
[DEBUG] - process3d.Smooth_ [menu = Plugins > Process > Smooth (3D), weight = 31.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.LutViewer [menu = Image > Color > Show LUT, weight = 16.0]
[DEBUG] - leica.Leica_SP_Reader [menu = File > Import > Leica SP..., weight = 37.0]
[DEBUG] - [BLACKLISTED] ij.plugin.OverlayCommands("image") [menu = Image > Overlay > Add Image..., weight = 1.0]
[DEBUG] - fiji.stacks.Radial_Reslice [menu = Image > Stacks > Radial Reslice, weight = 39.0]
[DEBUG] - mpicbg.ij.plugin.ElasticMontage [menu = Plugins > Registration > Elastic > Elastic Montaging, weight = 1.0]
[DEBUG] - BSH.BSH_Interpreter [menu = Plugins > Scripting > BeanShell Interpreter, weight = 13.0]
[DEBUG] - QuickPALM.Save_particles_table2img [menu = File > Import > QuickPALM >  Save Particles (.tif file - fast), weight = 2.0]
[DEBUG] - fiji.packaging.Package_Maker [menu = Plugins > Utilities > Make Fiji Package, weight = 9.0]
[DEBUG] - ij.plugin.URLOpener("leaf.jpg") [menu = File > Open Samples > Leaf (36K), weight = 17.0]
[DEBUG] - MosaicJ_ [menu = Plugins > Stitching > MosaicJ, weight = 3.0]
[DEBUG] - ij.plugin.HyperStackMaker [menu = File > New > Hyperstack..., weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("south") [menu = Process > Shadows > South, weight = 4.0]
[DEBUG] - ij.plugin.WindowOrganizer("tile") [menu = Window > Tile, weight = 4.0]
[DEBUG] - TurboReg_ [menu = Plugins > Registration > TurboReg , weight = 8.0]
[DEBUG] - fiji.selection.Rounded_Rectangle [menu = Edit > Selection > Make rectangular selection rounded, weight = 48.0]
[DEBUG] - process3d.Dilate_ [menu = Plugins > Process > Dilate (3D), weight = 12.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.AppearanceOptions [menu = Edit > Options > Appearance..., weight = 9.0]
[DEBUG] - ij.plugin.RoiEnlarger [menu = Edit > Selection > Enlarge..., weight = 24.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.frame.Recorder [menu = Plugins > Macros > Record..., weight = 4.0]
[DEBUG] - ij.plugin.URLOpener("FluorescentCells.zip") [menu = File > Open Samples > Fluorescent Cells (400K), weight = 13.0]
[DEBUG] - ij.plugin.ListVirtualStack [menu = File > Import > Stack From List..., weight = 8.0]
[DEBUG] - RGBtoLab_ [menu = Image > Color > RGBtoLab , weight = 34.0]
[DEBUG] - Stitch_Image_Grid_Sequence [menu = Plugins > Stitching > deprecated > Stitch Sequence of Grids of Images, weight = 3.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Selection("all") [menu = Edit > Selection > Select All, weight = 0.0]
[DEBUG] - io.Nrrd_Writer [menu = File > Save As > Nrrd ... , weight = 34.0]
[DEBUG] - ij.plugin.Selection("restore") [menu = Edit > Selection > Restore Selection, weight = 2.0]
[DEBUG] - Transform_MovingLeastSquaresMesh [menu = Plugins > Transform > Interactive Moving Least Squares, weight = 4.0]
[DEBUG] - ij.plugin.Selection("ellipse") [menu = Edit > Selection > Fit Ellipse, weight = 5.0]
[DEBUG] - ij.plugin.RGBStackMerge [menu = Image > Color > Merge Channels..., weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.OverlayLabels [menu = Image > Overlay > Labels..., weight = 9.0]
[DEBUG] - ij.plugin.filter.FFTFilter [menu = Process > FFT > Bandpass Filter..., weight = 14.0]
[DEBUG] - ij.plugin.filter.RankFilters("outliers") [menu = Process > Noise > Remove Outliers..., weight = 14.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("northeast") [menu = Process > Shadows > Northeast, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.OverlayCommands("remove") [menu = Image > Overlay > Remove Overlay, weight = 6.0]
[DEBUG] - Slice_Remover [menu = Image > Stacks > Tools  > Slice Remover, weight = 33.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("min") [menu = Process > Math > Min..., weight = 7.0]
[DEBUG] - PIV_analyser [menu = Analyze > Optic Flow > PIV analysis, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.frame.ThresholdAdjuster [menu = Image > Adjust > Threshold..., weight = 3.0]
[DEBUG] - fiji.drawing.Radial_Gradient [menu = Image > Drawing > Radial Gradient, weight = 0.0]
[DEBUG] - loci.plugins.Slicer("") [menu = Plugins > Bio-Formats > Stack Slicer, weight = 25.0]
[DEBUG] - fiji.util.Recent_Commands [menu = Plugins > Utilities > Repeat a Recent Command, weight = 8.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Transformer("right") [menu = Image > Transform > Rotate 90 Degrees Right, weight = 3.0]
[DEBUG] - ij.plugin.URLOpener("Dot_Blot.jpg") [menu = File > Open Samples > Dot Blot (7K), weight = 11.0]
[DEBUG] - AlgorithmLauncher("") [menu = Plugins > Process > ImgLib Algorithm Launcher, weight = 29.0]
[DEBUG] - anisotropic_diffusion.Anisotropic_Diffusion_2D [menu = Plugins > Process > Anisotropic Diffusion 2D, weight = 27.0]
[DEBUG] - Image5D_to_Stack("") [menu = Plugins > Image5D > Image5D to Stack, weight = 18.0]
[DEBUG] - fiji.selection.Select_Bounding_Box("autocrop") [menu = Image > Adjust > Auto Crop, weight = 20.0]
[DEBUG] - io.PDF_Writer [menu = File > Save As > PDF ... , weight = 39.0]
[DEBUG] - process3d.Minimum_ [menu = Plugins > Process > Minimum (3D), weight = 21.0]
[DEBUG] - ij.plugin.URLOpener("Spindly-GFP.zip") [menu = File > Open Samples > Mitosis (26MB, 5D stack), weight = 20.0]
[DEBUG] - LSM_Reader("about") [menu = Help > About Plugins > LSMReader..., weight = 24.0]
[DEBUG] - ij.plugin.Selection("rotate") [menu = Edit > Selection > Rotate..., weight = 23.0]
[DEBUG] - features.Tubeness_ [menu = Plugins > Analyze > Tubeness, weight = 8.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Options("reset") [menu = Edit > Options > Reset... , weight = 26.0]
[DEBUG] - ij.plugin.FFT("swap") [menu = Process > FFT > Swap Quadrants, weight = 17.0]
[DEBUG] - Clojure.Refresh_Clojure_Scripts [menu = Plugins > Scripting > Refresh Clojure Scripts, weight = 12.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.ArrowToolOptions [menu = Edit > Options > Arrow Tool..., weight = 5.0]
[DEBUG] - Seam_Remover [menu = Plugins > Process > Seam remover, weight = 5.0]
[DEBUG] - ij.plugin.Clipboard("copy") [menu = Edit > Copy, weight = 12.0]
[DEBUG] - ij.plugin.URLOpener("http://fiji.sc/samples/new-lenna.jpg") [menu = File > Open Samples > The New Lenna (95K), weight = 56.0]
[DEBUG] - loci.plugins.LociImporter("location=[Local machine] windowless=false ") [menu = File > Import > Bio-Formats, weight = 32.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("north") [menu = Process > Shadows > North, weight = 0.0]
[DEBUG] - fiji.selection.Select_Bounding_Box("autoselect") [menu = Edit > Selection > Select Bounding Box (guess background color), weight = 46.0]
[DEBUG] - ij.plugin.MontageMaker [menu = Image > Stacks > Make Montage..., weight = 17.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Colors [menu = Edit > Options > Colors..., weight = 8.0]
[DEBUG] - Stitch_Multiple_Series_File [menu = Plugins > Stitching > deprecated > Stitch Multiple Series or Tile Scan File, weight = 6.0]
[DEBUG] - Stack_Interleaver [menu = Image > Stacks > Tools  > Interleave, weight = 37.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/MRI_Microtubules_Tools.ijm") [menu = Plugins > Macros > MRI Microtubules Tools, weight = 2.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://fiji.sc/") [menu = Help > Fiji Wiki, weight = 54.0]
[DEBUG] - ij.plugin.GelAnalyzer("plot") [menu = Analyze > Gels > Plot Lanes, weight = 2.0]
[DEBUG] - Compute_Topography [menu = Analyze > TopoJ > Compute Topography, weight = 0.0]
[DEBUG] - ij.plugin.ChannelArranger [menu = Image > Color > Arrange Channels..., weight = 2.0]
[DEBUG] - lenscorrection.Distortion_Correction [menu = Plugins > Transform > Distortion Correction, weight = 10.0]
[DEBUG] - ij.plugin.filter.Filler("draw") [menu = Edit > Draw, weight = 29.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/TrakEM2_Example_Scripts/Homogenize_Ball_Radius.py") [menu = Plugins > Examples > TrakEM2_Example_Scripts > Homogenize Ball Radius, weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Filters("sharpen") [menu = Process > Sharpen, weight = 1.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/TrakEM2_Example_Scripts/T2_Select_All.py") [menu = Plugins > Examples > TrakEM2_Example_Scripts > T2 Select All, weight = 2.0]
[DEBUG] - fiji.Upload_Image_To_Wiki [menu = Plugins > Utilities > Fiji > Upload Image to Fiji Wiki, weight = 3.0]
[DEBUG] - Implicit_Interpolate_Binary [menu = Plugins > Process > Implicit Interpolate Binary, weight = 1.0]
[DEBUG] - ij.plugin.filter.EDM("edm") [menu = Process > Binary > Distance Map, weight = 39.0]
[DEBUG] - fiji.color.Convert_Red_To_Magenta_Clipboard [menu = Image > Color > Replace Red with Magenta (system clipboard), weight = 40.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("max") [menu = Process > Math > Max..., weight = 8.0]
[DEBUG] - Hypervolume_Opener("") [menu = Plugins > Image5D > Hypervolume Opener, weight = 5.0]
[DEBUG] - ij.plugin.filter.Writer("text") [menu = File > Save As > Text Image..., weight = 3.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("next") [menu = Image > Stacks > Next Slice [>], weight = 2.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Transformer("flipv") [menu = Image > Transform > Flip Vertically, weight = 1.0]
[DEBUG] - io.Save_DF3 [menu = File > Save As > DF3 ..., weight = 33.0]
[DEBUG] - ij.plugin.FFT("redisplay") [menu = Process > FFT > Redisplay Power Spectrum, weight = 2.0]
[DEBUG] - ij.plugin.FFTMath [menu = Process > FFT > FD Math..., weight = 16.0]
[DEBUG] - ij.plugin.URLOpener("Cell_Colony.jpg") [menu = File > Open Samples > Cell Colony (31K), weight = 7.0]
[DEBUG] - ij.plugin.MeasurementsWriter [menu = File > Save As > Results..., weight = 15.0]
[DEBUG] - ij.plugin.URLOpener("blobs.gif") [menu = File > Open Samples > Blobs (25K), weight = 3.0]
[DEBUG] - ij.plugin.OverlayCommands("list") [menu = Image > Overlay > List Elements, weight = 7.0]
[DEBUG] - ij.plugin.URLOpener("organ-of-corti.zip") [menu = File > Open Samples > Organ of Corti (2.8M, 4D stack), weight = 25.0]
[DEBUG] - Test_Java3D [menu = Plugins > Utilities > Debugging > Test Java3D, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.RectToolOptions [menu = Edit > Options > Rounded Rect Tool..., weight = 4.0]
[DEBUG] - ij.plugin.PluginInstaller [menu = Plugins > Install... , weight = 5.0]
[DEBUG] - bunwarpj.Credits [menu = Help > About Plugins > About bUnwarpJ..., weight = 27.0]
[DEBUG] - Open_Image5D("") [menu = Plugins > Image5D > Open Image5D, weight = 1.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("xor") [menu = Process > Math > XOR..., weight = 6.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.CommandLister("shortcuts") [menu = Plugins > Shortcuts > List Shortcuts..., weight = 0.0]
[DEBUG] - view5d.View5D_("") [menu = Image > Stacks > View5D > start viewer, weight = 0.0]
[DEBUG] - features.Surfaceness_ [menu = Plugins > Analyze > Surfaceness, weight = 9.0]
[DEBUG] - Local_Thickness_Driver("run") [menu = Analyze > Local Thickness > Local Thickness (complete process), weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("west") [menu = Process > Shadows > West, weight = 6.0]
[DEBUG] - ij.plugin.BatchProcessor("stack") [menu = Process > Batch > Virtual Stack..., weight = 3.0]
[DEBUG] - ij.plugin.Filters3D("max") [menu = Process > Filters > Maximum 3D..., weight = 22.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.LutLoader("cyan") [menu = Image > Lookup Tables > Cyan, weight = 20.0]
[DEBUG] - ij.plugin.CalibrationBar [menu = Analyze > Tools > Calibration Bar..., weight = 6.0]
[DEBUG] - ij.plugin.Converter("RGB Stack") [menu = Image > Type > RGB Stack, weight = 15.0]
[DEBUG] - io.Export_EPS [menu = File > Save As > EPS ..., weight = 41.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Image_To_Tool_Icon.bsh") [menu = Plugins > Examples > Image To Tool Icon, weight = 9.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("add") [menu = Process > Math > Add..., weight = 0.0]
[DEBUG] - fiji.selection.Select_Bounding_Box("autoautocrop") [menu = Image > Adjust > Auto Crop (guess background color), weight = 21.0]
[DEBUG] - ij.plugin.SimpleCommands("reset") [menu = Plugins > Utilities > Reset..., weight = 30.0]
[DEBUG] - ij.plugin.AVI_Reader [menu = File > Import > AVI..., weight = 10.0]
[DEBUG] - ij.plugin.Filters3D("min") [menu = Process > Filters > Minimum 3D..., weight = 21.0]
[DEBUG] - StackReg_ [menu = Plugins > Registration > StackReg, weight = 5.0]
[DEBUG] - plugin.Descriptor_based_registration [menu = Plugins > Registration > Descriptor-based registration (2d/3d), weight = 10.0]
[DEBUG] - CLI.Slide_Show [menu = Plugins > Utilities > Slide Show, weight = 7.0]
[DEBUG] - DeInterleave_ [menu = Image > Stacks > Tools  > Deinterleave, weight = 38.0]
[DEBUG] - Series_Labeler [menu = Image > Stacks > Series Labeler, weight = 41.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Zoom("in") [menu = Image > Zoom > In [+], weight = 0.0]
[DEBUG] - ij.plugin.filter.LutApplier [menu = Image > Lookup Tables > Apply LUT, weight = 1.0]
[DEBUG] - ij.plugin.SimpleCommands("install") [menu = Help > Installation..., weight = 3.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://imagej.nih.gov/ij/developer/macro/functions.html") [menu = Help > Macro Functions..., weight = 18.0]
[DEBUG] - register_virtual_stack.Register_Virtual_Stack_MT [menu = Plugins > Registration > Register Virtual Stack Slices, weight = 6.0]
[DEBUG] - ij.plugin.Macro_Runner("Examples/Add_Popup_Split_Channels.bsh") [menu = Plugins > Examples > Add Popup Split Channels, weight = 0.0]
[DEBUG] - ij.plugin.filter.RankFilters("max") [menu = Process > Filters > Maximum..., weight = 5.0]
[DEBUG] - ij.plugin.Zoom("scale") [menu = Image > Zoom > Scale to Fit, weight = 5.0]
[DEBUG] - ij.plugin.filter.Writer("bmp") [menu = File > Save As > BMP..., weight = 8.0]
[DEBUG] - [BLACKLISTED] ij.plugin.Animator("stop") [menu = Image > Stacks > Tools  > Stop Animation, weight = 21.0]
[DEBUG] - [BLACKLISTED] net.imagej.legacy.SwitchToModernMode [menu = Help > Switch to Modern Mode, weight = 59.0]
[DEBUG] - ij.plugin.filter.StackLabeler [menu = Image > Stacks > Label..., weight = 23.0]
[DEBUG] - _3D_objects_counter [menu = Analyze > 3D Objects Counter, weight = 46.0]
[DEBUG] - fiji.util.Circle_Fitter [menu = Edit > Selection > Fit Circle to Image, weight = 44.0]
[DEBUG] - Sync_Windows("about") [menu = Help > About Plugins > Sync Windows..., weight = 28.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/Polygon_.txt") [menu = Plugins > Macros > Polygon , weight = 3.0]
[DEBUG] - EDF_Easy_ [menu = Plugins > Process > Extended Depth of Field (Easy mode)..., weight = 32.0]
[DEBUG] - ij.plugin.Macro_Runner("Macros/RGB_Histogram.txt") [menu = Plugins > Macros > RGB Histogram, weight = 4.0]
[DEBUG] - ij.plugin.BrowserLauncher("http://fiji.sc/cgi-bin/gitweb.cgi?p=fiji.git;a=blob_plain;f=LICENSES;hb=HEAD") [menu = Help > Licenses, weight = 53.0]
[DEBUG] - ij.plugin.GaussianBlur3D [menu = Process > Filters > Gaussian Blur 3D..., weight = 18.0]
[DEBUG] - ij.plugin.filter.FFTCustomFilter [menu = Process > FFT > Custom Filter..., weight = 15.0]
[DEBUG] - net.sf.ij.plugin.ImageIOSaveAsPlugin("PNG") [menu = File > Save As > PNG ..., weight = 42.0]
[DEBUG] - ij.plugin.Macro_Runner("spiral/Batch_Process_Cellomics_Mosaics.bsh") [menu = Plugins > spiral > Batch Process Cellomics Mosaics, weight = 0.0]
[DEBUG] - leica.Leica_SP_Writer [menu = File > Save As > Leica SP ..., weight = 31.0]
[DEBUG] - ij.plugin.ContrastEnhancer [menu = Process > Enhance Contrast..., weight = 4.0]
[DEBUG] - ij.plugin.frame.Fitter [menu = Analyze > Tools > Curve Fitting..., weight = 3.0]
[DEBUG] - fiji.threshold.Auto_Threshold [menu = Image > Adjust > Auto Threshold, weight = 22.0]
[DEBUG] - plugin.Stitching_Pairwise [menu = Plugins > Stitching > Pairwise stitching, weight = 0.0]
[DEBUG] - ij.plugin.filter.Writer("raw") [menu = File > Save As > Raw Data..., weight = 5.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("reciprocal") [menu = Process > Math > Reciprocal, weight = 15.0]
[DEBUG] - isosurface.AmiraSurface [menu = File > Import > Show Amira Surface, weight = 38.0]
[DEBUG] - ij.plugin.OverlayCommands("image-roi") [menu = Edit > Selection > Image to Selection..., weight = 31.0]
[DEBUG] - Bug_Submitter.Bug_Submitter [menu = Help > Report a Bug, weight = 58.0]
[DEBUG] - ij.plugin.GroupedZProjector [menu = Image > Stacks > Tools  > Grouped Z Project..., weight = 7.0]
[DEBUG] - ij.plugin.filter.Writer("tiff") [menu = File > Save As > Tiff..., weight = 0.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.Shadows("northwest") [menu = Process > Shadows > Northwest, weight = 7.0]
[DEBUG] - ij.plugin.Selection("toline") [menu = Edit > Selection > Area to Line, weight = 30.0]
[DEBUG] - RATS_ [menu = Plugins > Segmentation > Robust Automatic Threshold Selection, weight = 11.0]
[DEBUG] - ij.plugin.URLOpener("http://fiji.sc/samples/first-instar-brain.zip") [menu = File > Open Samples > First-instar brain (6.3MB), weight = 58.0]
[DEBUG] - ini.trakem2.Open_Project [menu = File > Import > TrakEM2 XML..., weight = 60.0]
[DEBUG] - ij.plugin.RGBStackConverter [menu = Image > Color > Stack to RGB, weight = 14.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Zoom("100%") [menu = Image > Zoom > View 100%, weight = 3.0]
[DEBUG] - util.RGB_to_Luminance [menu = Image > Color > RGB to Luminance, weight = 33.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.OverlayCommands("flatten") [menu = Image > Overlay > Flatten, weight = 8.0]
[DEBUG] - process3d.Median_ [menu = Plugins > Process > Median (3D), weight = 20.0]
[DEBUG] - ij.plugin.Slicer [menu = Image > Stacks > Reslice [/]..., weight = 18.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.WandToolOptions [menu = Edit > Options > Wand Tool..., weight = 7.0]
[DEBUG] - ij.plugin.URLOpener("http://fiji.sc/samples/Sintered_Alumina.tif.zip") [menu = File > Open Samples > Sintered Alumina (2.6MB), weight = 52.0]
[DEBUG] - fiji.stacks.Dynamic_Reslice [menu = Image > Stacks > Dynamic Reslice, weight = 40.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Commands("save") [menu = File > Save, weight = 18.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.filter.ImageMath("nan") [menu = Process > Math > NaN Background, weight = 16.0]
[DEBUG] - ij.plugin.StackCombiner [menu = Image > Stacks > Tools  > Combine..., weight = 0.0]
[DEBUG] - fiji.scripting.OpenSourceForMenuItem [menu = Plugins > Scripting > Open Source for Menu Item, weight = 5.0]
[DEBUG] - Delaunay_Voronoi [menu = Plugins > Analyze > Delaunay Voronoi, weight = 3.0]
[DEBUG] - [BLACKLISTED] ij.plugin.StackEditor("delete") [menu = Image > Stacks > Delete Slice, weight = 1.0]
[DEBUG] - RJ_Gaussian [menu = Process > Noise > RandomJ > RandomJ Gaussian, weight = 3.0]
[DEBUG] - ij.plugin.StackInserter [menu = Image > Stacks > Tools  > Insert..., weight = 4.0]
[DEBUG] - ij.plugin.Clipboard("show") [menu = File > New > Internal Clipboard, weight = 3.0]
[DEBUG] - ij.plugin.SubstackMaker [menu = Image > Stacks > Tools  > Make Substack..., weight = 6.0]
[DEBUG] - video2.Draw_Roi [menu = Image > Video Editing > Draw Roi, weight = 7.0]
[DEBUG] - Differentials_ [menu = Process > Filters > Differentials, weight = 46.0]
[DEBUG] - Fill_holes [menu = Edit > Selection > Fill ROI holes, weight = 43.0]
[DEBUG] - Color_Inspector_3D [menu = Plugins > Color Inspector 3D, weight = 19.0]
[DEBUG] - [OVERRIDDEN] ij.plugin.Resizer("crop") [menu = Image > Crop, weight = 27.0]
[DEBUG] - ij.plugin.ControlPanel [menu = Plugins > Utilities > Control Panel..., weight = 0.0]
[DEBUG] - ij.plugin.ZProjector [menu = Image > Stacks > Z Project..., weight = 20.0]
[DEBUG] - [BLACKLISTED] ij.plugin.filter.ImageMath("sqr") [menu = Process > Math > Square, weight = 13.0]
[DEBUG] - ij.plugin.URLOpener("cardio.dcm.zip") [menu = File > Open Samples > Cardio (768K, RGB DICOM), weight = 6.0]
[DEBUG] - ij.plugin.ChannelSplitter [menu = Image > Color > Split Channels, weight = 0.0]
[INFO] Found 674 legacy plugins (plus 147 ignored).
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false
	items[0] = menu='Plugins > Skeleton > Skeletonize (2D/3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Skeletonize3D_.Skeletonize3D_'
	items[1] = menu='Plugins > Transform > TransformJ > TransformJ Translate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Translate'
	items[2] = menu='Process > Filters > Median 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='median', className='ij.plugin.Filters3D'
	items[3] = menu='Plugins > Examples > Delayed Snapshot Window', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Delayed_Snapshot_Window.bsh', className='ij.plugin.Macro_Runner'
	items[4] = menu='Analyze > Tools > Sync Windows', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sync_Windows'
	items[5] = menu='File > Open Samples > Bat Cochlea Renderings (449K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='bat-cochlea-renderings.zip', className='ij.plugin.URLOpener'
	items[6] = menu='Plugins > Process > Convolve (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Convolve_3d'
	items[7] = menu='Plugins > Utilities > ImageJ Properties...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.JavaProperties'
	items[8] = menu='Plugins > Process > IFT (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.IFT_'
	items[9] = menu='Plugins > Segmentation > Balloon', priority=0.0, enabled=true, pluginType=LegacyCommand, className='BalloonSegmentation_'
	items[10] = menu='Analyze > Colocalization > Coloc 2', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Coloc_2'
	items[11] = menu='Plugins > Scripting > Refresh Javas', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.scripting.java.Refresh_Javas'
	items[12] = menu='Analyze > QuickPALM > Analyse Particles', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Analyse_Particles'
	items[13] = menu='Image > Stacks > Tools  > Slice Keeper', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Slice_Keeper'
	items[14] = menu='Image > Type > HSB Stack', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='HSB Stack', className='ij.plugin.Converter'
	items[15] = menu='Plugins > Macros > Bulls Eye', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/Bulls_Eye.txt', className='ij.plugin.Macro_Runner'
	items[16] = menu='Plugins > Examples > Edit LUT As Text', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Edit_LUT_As_Text.py', className='ij.plugin.Macro_Runner'
	items[17] = menu='Process > Filters > Variance 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='var', className='ij.plugin.Filters3D'
	items[18] = menu='Plugins > Stitching > deprecated > Stitch Collection of Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Collection'
	items[19] = menu='Analyze > Gels > Reset', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='reset', className='ij.plugin.GelAnalyzer'
	items[20] = menu='Analyze > Distribution...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Distribution'
	items[21] = menu='Plugins > Process > Show Color Surfaces', priority=0.0, enabled=true, pluginType=LegacyCommand, className='isosurface.Show_Colour_Surfaces'
	items[22] = menu='Process > Noise > RandomJ > RandomJ Panel', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Panel'
	items[23] = menu='Plugins > Utilities > IJ Robot', priority=0.0, enabled=true, pluginType=LegacyCommand, className='IJ_Robot'
	items[24] = menu='Plugins > Process > Shape-based averaging', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Rohlfing_SBA'
	items[25] = menu='Plugins > Bio-Formats > Bio-Formats Importer', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=false ', className='loci.plugins.LociImporter'
	items[26] = menu='Window > Cascade', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cascade', className='ij.plugin.WindowOrganizer'
	items[27] = menu='File > Import > Reconstruct Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='reconstructreader.reconstruct.Reconstruct_Reader'
	items[28] = menu='Plugins > Integral Image Filters > Normalize Local Contrast', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.NormalizeLocalContrast'
	items[29] = menu='File > New > TrakEM2 (blank)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='blank', className='ini.trakem2.New_Project'
	items[30] = menu='Image > Annotate > Arrow ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.util.ArrowTool'
	items[31] = menu='Plugins > Stitching > deprecated > Stitch Grid of Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Grid'
	items[32] = menu='Plugins > Image5D > Duplicate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Duplicate_Image5D'
	items[33] = menu='Plugins > Tracking > MTrack2 ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrack2_'
	items[34] = menu='Plugins > Transform > TransformJ > TransformJ Rotate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Rotate'
	items[35] = menu='Plugins > Example02 CallCommand', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Example02_CallCommand'
	items[36] = menu='Analyze > Optic Flow > FlowJ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FlowJ_'
	items[37] = menu='Process > Image Expression Parser', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.process.Image_Expression_Parser'
	items[38] = menu='Plugins > Examples > downsample ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/downsample_.js', className='ij.plugin.Macro_Runner'
	items[39] = menu='Image > Color > Edit LUT...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.LUT_Editor'
	items[40] = menu='File > Import > QuickPALM >  Open VirtualStack', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Fast_VirtualStack_Opener.txt', className='QuickPALM.Run_MyMacro'
	items[41] = menu='Image > Type > 8-bit Color', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='8-bit Color', className='ij.plugin.Converter'
	items[42] = menu='Help > Refresh Menus', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='menus', className='ij.plugin.ImageJ_Updater'
	items[43] = menu='Edit > Selection > Select Bounding Box', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.selection.Select_Bounding_Box'
	items[44] = menu='Process > Filters > Minimum...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='min', className='ij.plugin.filter.RankFilters'
	items[45] = menu='File > Save As > Icns ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Icns_Writer'
	items[46] = menu='Analyze > TopoJ > Remove Slope', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Remove_Slope'
	items[47] = menu='Analyze > 3D Surface Plot', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Interactive_3D_Surface_Plot'
	items[48] = menu='Plugins > Utilities > Monitor Memory...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.MemoryMonitor'
	items[49] = menu='Plugins > Utilities > Thread killer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Thread_Killer'
	items[50] = menu='Plugins > Transform > Interactive Perspective', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Perspective'
	items[51] = menu='Process > Batch > Convert...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.BatchConverter'
	items[52] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Panel', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Panel'
	items[53] = menu='Plugins > Segmentation > Apply saved SIOX segmentator', priority=0.0, enabled=true, pluginType=LegacyCommand, className='siox.Load_Segmentation'
	items[54] = menu='File > Open Samples > Confocal Series (2.2MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='confocal-series.zip', className='ij.plugin.URLOpener'
	items[55] = menu='Plugins > Optic Flow > Integral Block MSE', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.MSEBlockFlow'
	items[56] = menu='Plugins > Examples > list all threads', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/list_all_threads.py', className='ij.plugin.Macro_Runner'
	items[57] = menu='Image > Type > RGB Color', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='RGB Color', className='ij.plugin.Converter'
	items[58] = menu='File > Save As > LSS16 ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.LSS16_Writer'
	items[59] = menu='Image > Stacks > Statistics', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Stack_Statistics'
	items[60] = menu='Plugins > Stacks > Average Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='vib.Average_Images'
	items[61] = menu='File > Save As > PNM ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='PNM', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
	items[62] = menu='File > Import > Text Image... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.TextReader'
	items[63] = menu='Plugins > Utilities > Search...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='search', className='ij.plugin.SimpleCommands'
	items[64] = menu='Plugins > Scripts > File > Make Screencast', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Scripts/File/Make_Screencast.bsh', className='ij.plugin.Macro_Runner'
	items[65] = menu='Plugins > Transform > TransformJ > TransformJ Embed', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Embed'
	items[66] = menu='Plugins > Process > Quantile Based Normalization', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.Quantile_Based_Normalization'
	items[67] = menu='File > Import > TorstenRaw GZ Reader...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.TorstenRaw_GZ_Reader'
	items[68] = menu='File > Import > Results... ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='import', className='ij.plugin.SimpleCommands'
	items[69] = menu='Plugins > Registration > Elastic > Elastic Stack Alignment', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.ElasticAlign'
	items[70] = menu='File > Import > Show LSMToolbox', priority=0.0, enabled=true, pluginType=LegacyCommand, className='LSM_Toolbox'
	items[71] = menu='Analyze > Local Thickness > Geometry to Distance Map', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='run', className='EDT_S1D'
	items[72] = menu='Analyze > Sholl Analysis...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sholl_Analysis'
	items[73] = menu='Process > Subtract Background...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.BackgroundSubtracter'
	items[74] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Options'
	items[75] = menu='Plugins > New  > Macro Tool', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='macro-tool', className='ij.plugin.NewPlugin'
	items[76] = menu='Analyze > Local Thickness > Distance Ridge to Local Thickness', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='run', className='Local_Thickness_Parallel'
	items[77] = menu='Help > About Plugins > About This Submenu...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='ij.plugin.SimpleCommands'
	items[78] = menu='Plugins > Utilities > CPU Meter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CPU_Meter'
	items[79] = menu='File > Open Samples > Boats (356K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='boats.gif', className='ij.plugin.URLOpener'
	items[80] = menu='File > Import > Text File... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.TextFileReader'
	items[81] = menu='File > Import > Bio-Formats (Windowless)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=true ', className='loci.plugins.LociImporter'
	items[82] = menu='Image > Color > Replace Red with Magenta', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.color.Convert_Red_To_Magenta'
	items[83] = menu='Process > Multiple Image Processor', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MultipleImageProcessor'
	items[84] = menu='Plugins > Process > Triangle Algorithm', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Triangle_Algorithm'
	items[85] = menu='File > Open Samples > Clown (14K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='clown.jpg', className='ij.plugin.URLOpener'
	items[86] = menu='Process > Calculator Plus', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Calculator_Plus'
	items[87] = menu='Plugins > Image5D > Image5D Stack to RGB', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Image5D_Stack_to_RGB'
	items[88] = menu='Plugins > Image5D > RGB to Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RGB_to_Image5D'
	items[89] = menu='Help > About Plugins > About TrakEM2...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ini.trakem2.utils.Utils'
	items[90] = menu='Plugins > Process > Flood Fill(3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Flood_Fill'
	items[91] = menu='Process > Noise > ROF Denoise', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.denoise.ROF_Denoise'
	items[92] = menu='File > Import > Amira...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='AmiraMeshReader_'
	items[93] = menu='Image > Adjust > Canvas Size...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.CanvasResizer'
	items[94] = menu='Plugins > Process > Particle Analyzer (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Particle_Analyzer_3D'
	items[95] = menu='Edit > Selection > Fit Spline', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spline', className='ij.plugin.Selection'
	items[96] = menu='Plugins > Process > Frangi Vesselness (imglib, experimental)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.features.Frangi_'
	items[97] = menu='File > Save As > AmiraTable ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='AmiraTableWriter_'
	items[98] = menu='Plugins > Scripting > Refresh BSH Scripts', priority=0.0, enabled=true, pluginType=LegacyCommand, className='BSH.Refresh_BSH_Scripts'
	items[99] = menu='Help > Plugins...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/plugins', className='ij.plugin.BrowserLauncher'
	items[100] = menu='Plugins > SPIM Registration > deprecated > MultiChannel Registration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MultiChannel_SPIM_Registration'
	items[101] = menu='Analyze > QuickPALM > Load Particles (.tif file - fast)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Load_particles_tableFromImg'
	items[102] = menu='Process > Noise > RandomJ > RandomJ Uniform', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Uniform'
	items[103] = menu='Analyze > Tools > Save XY Coordinates...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.XYCoordinates'
	items[104] = menu='File > Save As > Compressed TIFF ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='TIFF', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
	items[105] = menu='Plugins > Examples > Single Voxel in 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='tracing.Test_Single_Voxel'
	items[106] = menu='File > Import > Vaa3d...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='org.janelia.vaa3d.reader.Vaa3d_Reader'
	items[107] = menu='File > Import > URL...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.URLOpener'
	items[108] = menu='Plugins > Process > Max (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Maximum_'
	items[109] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Structure', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Structure'
	items[110] = menu='Image > Hyperstacks > Re-order Hyperstack ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.stacks.Hyperstack_rearranger'
	items[111] = menu='File > Save As > Jpeg...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='jpeg', className='ij.plugin.filter.Writer'
	items[112] = menu='Plugins > Feature Extraction > Extract MOPS Correspondences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MOPS_ExtractPointRoi'
	items[113] = menu='Plugins > Segmentation > Blow/Lasso Tool', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Lasso_'
	items[114] = menu='Plugins > Image5D > Open Series As Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Open_Series_As_Image5D'
	items[115] = menu='Window > Show All', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='show', className='ij.plugin.WindowOrganizer'
	items[116] = menu='Plugins > Bio-Formats > Help', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://www.openmicroscopy.org/site/support/bio-formats/users/index.html', className='ij.plugin.BrowserLauncher'
	items[117] = menu='Plugins > Examples > TrakEM2_Example_Scripts > Measure AreaLists', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py', className='ij.plugin.Macro_Runner'
	items[118] = menu='Plugins > Segmentation > Graph Cut', priority=0.0, enabled=true, pluginType=LegacyCommand, className='graphcut.Graph_Cut'
	items[119] = menu='File > Save As > Biorad ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Biorad_Writer'
	items[120] = menu='Window > Put Behind [tab]', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tab', className='ij.plugin.Commands'
	items[121] = menu='Plugins > Examples > TrakEM2_Example_Scripts > T2 set all transforms to identity', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py', className='ij.plugin.Macro_Runner'
	items[122] = menu='Analyze > Tools > PointPicker', priority=0.0, enabled=true, pluginType=LegacyCommand, className='PointPicker_'
	items[123] = menu='Plugins > Segmentation > Level Sets', priority=0.0, enabled=true, pluginType=LegacyCommand, className='levelsets.ij.LevelSet'
	items[124] = menu='Analyze > Label', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='label', className='ij.plugin.filter.Filler'
	items[125] = menu='Image > Stacks > Plot Z-axis Profile', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ZAxisProfiler'
	items[126] = menu='Image > Adjust > Auto Local Threshold', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.threshold.Auto_Local_Threshold'
	items[127] = menu='Image > Stacks > Tools  > Montage to Stack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.StackMaker'
	items[128] = menu='File > Import > Biorad...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Biorad_Reader'
	items[129] = menu='Plugins > Transform > TransformJ > TransformJ Affine', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Affine'
	items[130] = menu='File > Save As > AVI... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.AVI_Writer'
	items[131] = menu='File > Save As > LUT...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='lut', className='ij.plugin.filter.Writer'
	items[132] = menu='Plugins > Transform > TransformJ > TransformJ Matrix', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Matrix'
	items[133] = menu='Process > Filters > Mean...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='mean', className='ij.plugin.filter.RankFilters'
	items[134] = menu='Plugins > Analyze > Measure RGB', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Analyze/Measure_RGB.txt', className='ij.plugin.Macro_Runner'
	items[135] = menu='Help > ImageJ News...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/notes.html', className='ij.plugin.BrowserLauncher'
	items[136] = menu='File > Save As > Wavefront .OBJ ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='marchingcubes.ExportMesh_'
	items[137] = menu='Image > Transform > Rotate... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.Rotator'
	items[138] = menu='Plugins > Transform > Interactive Affine', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Affine'
	items[139] = menu='Image > Lookup Tables > Invert LUT', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='invert', className='ij.plugin.LutLoader'
	items[140] = menu='Plugins > Transform > Interactive Stack Rotation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stack_Rotate'
	items[141] = menu='Plugins > Registration > Elastic > Test Block Matching Parameters', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.BlockMatching_TestParameters'
	items[142] = menu='Plugins > Process > Maximum (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Maximum_'
	items[143] = menu='File > Save As > Selection...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.RoiWriter'
	items[144] = menu='File > Open Samples > Malaria Sporozoites (9.2MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/_malaria_parasites.tif', className='ij.plugin.URLOpener'
	items[145] = menu='Process > Binary > Options...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='options', className='ij.plugin.filter.Binary'
	items[146] = menu='Plugins > Tracking > Load a TrackMate file', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.trackmate.LoadTrackMatePlugIn_'
	items[147] = menu='File > New > System Clipboard', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='showsys', className='ij.plugin.Clipboard'
	items[148] = menu='Plugins > LOCI > Please use the 'Bio-Formats' menu item instead', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.About'
	items[149] = menu='Plugins > Image5D > Transfer Channel Settings', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transfer_Channel_Settings'
	items[150] = menu='Plugins > spiral > Create Spiral Image', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spiral/Create_Spiral_Image.bsh', className='ij.plugin.Macro_Runner'
	items[151] = menu='Edit > Selection > Line to Area', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='toarea', className='ij.plugin.Selection'
	items[152] = menu='Plugins > Stitching > deprecated > 2D Stitching', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitching_2D'
	items[153] = menu='File > Save As > XY Coordinates...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.XYWriter'
	items[154] = menu='Plugins > Scripting > JRuby Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='JRuby.JRuby_Interpreter'
	items[155] = menu='Analyze > Gels > Gel Analyzer Options...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='options', className='ij.plugin.GelAnalyzer'
	items[156] = menu='Process > Binary > Ultimate Points', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='points', className='ij.plugin.filter.EDM'
	items[157] = menu='File > Import > TIFF Virtual Stack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.FileInfoVirtualStack'
	items[158] = menu='Analyze > Clear Results', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='clear', className='ij.plugin.filter.Analyzer'
	items[159] = menu='Analyze > QuickPALM > Save Particles (.tif file - fast)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Save_particles_table2img'
	items[160] = menu='Analyze > Gels > Select First Lane', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='first', className='ij.plugin.GelAnalyzer'
	items[161] = menu='Image > Scale...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Scaler'
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	items[320] = menu='Plugins > Examples > chess ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/chess_.py', className='ij.plugin.Macro_Runner'
	items[321] = menu='Plugins > New  > Plugin Tool', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='plugin-tool', className='ij.plugin.NewPlugin'
	items[322] = menu='Plugins > OMERO > Connect to OMERO', priority=0.0, enabled=true, pluginType=LegacyCommand, className='org.openmicroscopy.shoola.MainIJPlugin'
	items[323] = menu='Plugins > Examples > CoverMaker > Cover Maker', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/CoverMaker/Cover_Maker.py', className='ij.plugin.Macro_Runner'
	items[324] = menu='Image > Stacks > Tools  > Stack Splitter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stack_Splitter'
	items[325] = menu='Analyze > QuickPALM > About...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='About_.txt', className='QuickPALM.Run_MyMacro'
	items[326] = menu='Plugins > Process > Fast FFT (2D/3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='registration3d.Fast_FourierTransform'
	items[327] = menu='Help > Macros...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/macros/', className='ij.plugin.BrowserLauncher'
	items[328] = menu='Plugins > Transform > Interactive Rigid', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Rigid'
	items[329] = menu='Process > Binary > Outline', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='outline', className='ij.plugin.filter.Binary'
	items[330] = menu='Analyze > QuickPALM > Fast VirtualStack Opener', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Fast_VirtualStack_Opener.txt', className='QuickPALM.Run_MyMacro'
	items[331] = menu='Process > Filters > Show Circular Masks...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='masks', className='ij.plugin.filter.RankFilters'
	items[332] = menu='Plugins > Transform > TransformJ > TransformJ Turn', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Turn'
	items[333] = menu='Edit > Selection > Create Selection', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='from', className='ij.plugin.Selection'
	items[334] = menu='File > Import > Icns...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Icns_Reader'
	items[335] = menu='Image > Transform > Image to Results', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='itor', className='ij.plugin.SimpleCommands'
	items[336] = menu='Plugins > SPIM Registration > deprecated > Advanced Registration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='SPIM_Registration_File'
	items[337] = menu='File > Open Samples > AuPbSn 40 (56K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='AuPbSn40.jpg', className='ij.plugin.URLOpener'
	items[338] = menu='Image > Color > Simulate Color Blindness', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Dichromacy_'
	items[339] = menu='Plugins > Analyze > Visual grep', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Visual_Grep'
	items[340] = menu='Process > Morphology > Gray Morphology', priority=0.0, enabled=true, pluginType=LegacyCommand, className='GrayMorphology_'
	items[341] = menu='Plugins > Tracking > MTrackJ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrackJ_'
	items[342] = menu='Image > Stacks > Tools  > Remove Slice Labels', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='remove', className='ij.plugin.SimpleCommands'
	items[343] = menu='Image > Adjust > Window/Level...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='wl', className='ij.plugin.frame.ContrastAdjuster'
	items[344] = menu='File > Import > Nrrd ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Nrrd_Reader'
	items[345] = menu='Image > Color > RGB to CIELAB', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RGB_to_CIELAB'
	items[346] = menu='Plugins > Optic Flow > Integral Block PMCC', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.PMCCBlockFlow'
	items[347] = menu='Plugins > Volume Viewer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.volumeviewer.Volume_Viewer'
	items[348] = menu='Image > Hyperstacks > New Hyperstack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.HyperStackMaker'
	items[349] = menu='Process > Filters > Variance...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='variance', className='ij.plugin.filter.RankFilters'
	items[350] = menu='Image > Hyperstacks > Reduce Dimensionality...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.HyperStackReducer'
	items[351] = menu='Plugins > Utilities > Collect Garbage', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CollectGarbage_'
	items[352] = menu='Plugins > Utilities > Debugging > Test Marching Cubes', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MC_Test'
	items[353] = menu='Plugins > Process > Laplace (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Laplace_'
	items[354] = menu='File > Import > ICO...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.ICO_Reader'
	items[355] = menu='Plugins > Analyze > Find differences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FindIt_'
	items[356] = menu='Plugins > Scripting > Jython Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Jython.Jython_Interpreter'
	items[357] = menu='Analyze > Set Measurements...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='set', className='ij.plugin.filter.Analyzer'
	items[358] = menu='Process > Noise > RandomJ > RandomJ Binomial', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Binomial'
	items[359] = menu='Plugins > Utilities > Monitor Events...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.EventListener'
	items[360] = menu='Help > Documentation...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/docs', className='ij.plugin.BrowserLauncher'
	items[361] = menu='Analyze > Tools > Sync Measure 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sync_Measure_3D'
	items[362] = menu='Edit > Selection > Straighten...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Straightener'
	items[363] = menu='File > Import > MRC Leginon ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Open_MRC_Leginon'
	items[364] = menu='Image > Stacks > 3D Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Projector'
	items[365] = menu='Plugins > Stitching > deprecated > Stitch Directory with Images (unknown configuration)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Directory'
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	items[367] = menu='Plugins > Process > Replace value', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Replace_Value'
	items[368] = menu='Process > Noise > Remove NaNs...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='nan', className='ij.plugin.filter.RankFilters'
	items[369] = menu='File > Open Samples > Bat Cochlea Volume (19K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='bat-cochlea-volume.zip', className='ij.plugin.URLOpener'
	items[370] = menu='Plugins > Tracking > Manual Tracking', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Manual_Tracking'
	items[371] = menu='Analyze > QuickPALM > Correct Particles Drift (based on ROI)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Correct_Drift2'
	items[372] = menu='Image > Video Editing > Add Empty Frame', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Add_Empty_Frame'
	items[373] = menu='Plugins > Macros > Run...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Macro_Runner'
	items[374] = menu='File > Import > QuickPALM >  Load Particles (.tif file - fast)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Load_particles_tableFromImg'
	items[375] = menu='Plugins > Segmentation > deprecated > Advanced Weka Segmentation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='trainableSegmentation.Weka_Segmentation'
	items[376] = menu='Plugins > 3D Viewer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ImageJ_3D_Viewer'
	items[377] = menu='Plugins > Segmentation > deprecated > Trainable Segmentation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='trainableSegmentation.Trainable_Segmentation'
	items[378] = menu='File > Import > SPIM', priority=0.0, enabled=true, pluginType=LegacyCommand, className='spimopener.SPIM_Opener'
	items[379] = menu='Plugins > Examples > Extended Profile Plot', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Extended_Profile_Plot.bsh', className='ij.plugin.Macro_Runner'
	items[380] = menu='Image > Color > Dichromacy', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Dichromacy_'
	items[381] = menu='Help > About Plugins > Image IO ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='net.sf.ij.plugin.AboutImageIO'
	items[382] = menu='Plugins > Utilities > Fiji > New Fiji Wiki Screenshot', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='screenshot', className='fiji.Wiki_Editor'
	items[383] = menu='File > Save As > FITS...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='fits', className='ij.plugin.filter.Writer'
	items[384] = menu='File > Open Samples > TEM Filter (112K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='TEM_filter_sample.jpg', className='ij.plugin.URLOpener'
	items[385] = menu='Plugins > Bio-Formats > Bio-Formats Windowless Importer', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=true ', className='loci.plugins.LociImporter'
	items[386] = menu='Help > About Plugins > MTrackJ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrackJ_Website'
	items[387] = menu='Plugins > Bio-Formats > Bio-Formats Plugins Configuration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.config.LociConfig'
	items[388] = menu='File > Import > PDF ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.PDF_Viewer'
	items[389] = menu='File > Import > Amira as TrakEM2...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='amira', className='ini.trakem2.New_Project'
	items[390] = menu='Plugins > New  > Table...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='table', className='ij.plugin.NewPlugin'
	items[391] = menu='Plugins > Transform > Interactive Similarity', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Similarity'
	items[392] = menu='Process > Filters > Median...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='median', className='ij.plugin.filter.RankFilters'
	items[393] = menu='Plugins > SPIM Registration > Multi-view deconvolution', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.Multi_View_Deconvolution'
	items[394] = menu='Help > About Plugins > Bio-Formats Plugins...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.About'
	items[395] = menu='Image > Stacks > Tools  > Stack Sorter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stack_Sorter'
	items[396] = menu='Plugins > Scripting > Javascript Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Javascript.Javascript_Interpreter'
	items[397] = menu='Analyze > QuickPALM > Stop Analyse Particles (kills the threads)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Stop_processing'
	items[398] = menu='Plugins > Transform > TransformJ > TransformJ Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Options'
	items[399] = menu='Plugins > Examples > Fiji Logo 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Fiji_Logo_3D.js', className='ij.plugin.Macro_Runner'
	items[400] = menu='Edit > Selection > Fit Circle', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='circle', className='ij.plugin.Selection'
	items[401] = menu='Image > Video Editing > Make Transition', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Make_Transition'
	items[402] = menu='Analyze > Directionality', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.analyze.directionality.Directionality_'
	items[403] = menu='Plugins > Image5D > Z Project', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Z_Project'
	items[404] = menu='Plugins > Integral Image Filters > Standard Deviation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.StandardDeviation'
	items[405] = menu='File > Open Samples > Line Graph (21K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='LineGraph.jpg', className='ij.plugin.URLOpener'
	items[406] = menu='File > Import > Image Sequence...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.FolderOpener'
	items[407] = menu='Analyze > 3D OC Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='_3D_OC_Options'
	items[408] = menu='Plugins > Macros > Install...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.MacroInstaller'
	items[409] = menu='Plugins > Image5D > Make Montage', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Make_Montage'
	items[410] = menu='Plugins > Process > Mask Of Nearby Points', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.Mask_Of_Nearby_Points'
	items[411] = menu='Image > Video Editing > Open Video', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Open_Video'
	items[412] = menu='Image > Color > Retinex', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Retinex_'
	items[413] = menu='File > Open Samples > Embryos (42K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='embryos.jpg', className='ij.plugin.URLOpener'
	items[414] = menu='Help > About Plugins > LSMToolbox...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='LSM_Toolbox'
	items[415] = menu='Help > Dev. Resources...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/developer/index.html', className='ij.plugin.BrowserLauncher'
	items[416] = menu='Image > Drawing > Linear Gradient', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.drawing.Linear_Gradient'
	items[417] = menu='Plugins > spiral > Batch Process Cellomics Timeseries Mosaics', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spiral/Batch_Process_Cellomics_Timeseries_Mosaics.bsh', className='ij.plugin.Macro_Runner'
	items[418] = menu='File > Open Samples > CT (420K, 16-bit DICOM)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='ct.dcm.zip', className='ij.plugin.URLOpener'
	items[419] = menu='Plugins > Integral Image Filters > Sample Variance', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.SampleVariance'
	items[420] = menu='Plugins > Bio-Formats > Bio-Formats Macro Extensions', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.macro.LociFunctions'
	items[421] = menu='Edit > Cut', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cut', className='ij.plugin.Clipboard'
	items[422] = menu='Analyze > Shape Index Map', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.geom.Shape_Index_Map'
	items[423] = menu='Process > Batch > Macro... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.BatchProcessor'
	items[424] = menu='Plugins > Scripting > Refresh Macros', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CLI.Refresh_Macros'
	items[425] = menu='File > Import > Analyze...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Analyze_Reader'
	items[426] = menu='Help > Mailing List...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='https://list.nih.gov/archives/imagej.html', className='ij.plugin.BrowserLauncher'
	items[427] = menu='Plugins > Segmentation > Segmentation Editor', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Segmentation_Editor'
	items[428] = menu='Plugins > Compile and Run...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Compiler'
	items[429] = menu='Plugins > New  > Macro', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='macro', className='ij.plugin.NewPlugin'
	items[430] = menu='Edit > Selection > Make Inverse', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='inverse', className='ij.plugin.Selection'
	items[431] = menu='Plugins > Registration > Descriptor-based series registration (2d/3d + t)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Descriptor_based_series_registration'
	items[432] = menu='Plugins > New  > JavaScript', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='javascript', className='ij.plugin.NewPlugin'
	items[433] = menu='Plugins > Registration > Moving Least Squares', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Moving_Least_Squares'
	items[434] = menu='Image > Color > Display LUTs', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='display', className='ij.plugin.SimpleCommands'
	items[435] = menu='Image > Adjust > Line Width... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.LineWidthAdjuster'
	items[436] = menu='Plugins > Utilities > Fiji > New Fiji Tutorial', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tutorial-maker', className='fiji.Wiki_Editor'
	items[437] = menu='File > Open Samples > Tracks for TrackMate (807K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/FakeTracks.tif', className='ij.plugin.URLOpener'
	items[438] = menu='Plugins > Utilities > Fiji > Inspect Java Objects', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.debugging.Object_Inspector'
	items[439] = menu='Plugins > Examples > CoverMaker > Prepare Cover Maker Database', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/CoverMaker/Prepare_Cover_Maker_Database.py', className='ij.plugin.Macro_Runner'
	items[440] = menu='Plugins > Process > Extended Depth of Field (Expert mode)...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='EDF_Expert_'
	items[441] = menu='Analyze > Gels > Re-plot Lanes', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='replot', className='ij.plugin.GelAnalyzer'
	items[442] = menu='Edit > Paste', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='paste', className='ij.plugin.Clipboard'
	items[443] = menu='Process > Binary > Skeletonize', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='skel', className='ij.plugin.filter.Binary'
	items[444] = menu='Analyze > Local Thickness > Distance Map to Distance Ridge', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='run', className='Distance_Ridge'
	items[445] = menu='Plugins > Transform > Panorama equirectangular view', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.panorama.Panorama_View'
	items[446] = menu='Plugins > Examples > Delayed Snapshot', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Delayed_Snapshot.py', className='ij.plugin.Macro_Runner'
	items[447] = menu='Edit > Selection > Make Band...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='band', className='ij.plugin.Selection'
	items[448] = menu='Plugins > Optic Flow > Gaussian Window MSE', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.MSEGaussianFlow'
	items[449] = menu='Edit > Clear', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='clear', className='ij.plugin.filter.Filler'
	items[450] = menu='Plugins > Process > Shape-Based Averaging (Experimental)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.RohlfingSBA'
	items[451] = menu='Process > Noise > RandomJ > RandomJ Poisson', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Poisson'
	items[452] = menu='Plugins > Feature Extraction > Extract Block Matching Correspondences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.BlockMatching_ExtractPoinRoi'
	items[453] = menu='Analyze > Surface Plot...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.SurfacePlotter'
	items[454] = menu='Plugins > Transform > TransformJ > TransformJ Scale', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Scale'
	items[455] = menu='Plugins > Image5D > Set Position', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Set_Position'
	items[456] = menu='Process > Noise > RandomJ > RandomJ Exponential', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Exponential'
	items[457] = menu='Process > FFT > FFT Options...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='options', className='ij.plugin.FFT'
	items[458] = menu='File > Import > Bio-Formats (Remote)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Internet]', className='loci.plugins.LociImporter'
	items[459] = menu='Image > Adjust > Size...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Resizer'
	items[460] = menu='Plugins > Analyze > Compute Curvatures', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Compute_Curvatures'
	items[461] = menu='Analyze > Plot Profile', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='plot', className='ij.plugin.Profiler'
	items[462] = menu='File > Save As > AmiraMesh ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='AmiraMeshWriter_'
	items[463] = menu='File > Open Next', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.NextImageOpener'
	items[464] = menu='Analyze > QuickPALM > Update QuickPALM', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Update_.txt', className='QuickPALM.Run_MyMacro'
	items[465] = menu='Plugins > Examples > Multithreaded Image Processing in Javascript', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Multithreaded_Image_Processing_in_Javascript.js', className='ij.plugin.Macro_Runner'
	items[466] = menu='Analyze > Gels > Select Next Lane', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='next', className='ij.plugin.GelAnalyzer'
	items[467] = menu='File > Print...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='print', className='ij.plugin.filter.Printer'
	items[468] = menu='Analyze > Set Scale...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.ScaleDialog'
	items[469] = menu='Edit > Selection > To Bounding Box', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tobox', className='ij.plugin.Selection'
	items[470] = menu='Help > About Plugins > Color Histogram...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='ColorHistogram_'
	items[471] = menu='Image > Stacks > Stack to Images', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='toimages', className='ij.plugin.StackEditor'
	items[472] = menu='Process > Filters > Convolve...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.Convolver'
	items[473] = menu='Plugins > Segmentation > SIOX: Simple Interactive Object Extraction', priority=0.0, enabled=true, pluginType=LegacyCommand, className='siox.Siox_Segmentation'
	items[474] = menu='Plugins > Integral Image Filters > Remove Outliers', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.RemoveOutliers'
	items[475] = menu='Help > About Plugins > Image5D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='I5D_about'
	items[476] = menu='Plugins > Utilities > Threads...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ThreadLister'
	items[477] = menu='Plugins > Macros > About Plugin Macros', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/About_Plugin_Macros.txt', className='ij.plugin.Macro_Runner'
	items[478] = menu='Plugins > Examples > Find Dimension of Raw Image', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Find_Dimension_of_Raw_Image.py', className='ij.plugin.Macro_Runner'
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	items[486] = menu='File > Import > FIB-SEM ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.FIBSEM_Reader'
	items[487] = menu='File > Open Samples > Fly Brain (1MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='flybrain.zip', className='ij.plugin.URLOpener'
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	items[522] = menu='File > Import > Leica SP...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='leica.Leica_SP_Reader'
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	items[626] = menu='Image > Stacks > Label...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.StackLabeler'
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	items[628] = menu='Edit > Selection > Fit Circle to Image', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.util.Circle_Fitter'
	items[629] = menu='Help > About Plugins > Sync Windows...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='Sync_Windows'
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	items[631] = menu='Plugins > Process > Extended Depth of Field (Easy mode)...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='EDF_Easy_'
	items[632] = menu='Plugins > Macros > RGB Histogram', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/RGB_Histogram.txt', className='ij.plugin.Macro_Runner'
	items[633] = menu='Help > Licenses', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/cgi-bin/gitweb.cgi?p=fiji.git;a=blob_plain;f=LICENSES;hb=HEAD', className='ij.plugin.BrowserLauncher'
	items[634] = menu='Process > Filters > Gaussian Blur 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.GaussianBlur3D'
	items[635] = menu='Process > FFT > Custom Filter...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.FFTCustomFilter'
	items[636] = menu='File > Save As > PNG ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='PNG', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
	items[637] = menu='Plugins > spiral > Batch Process Cellomics Mosaics', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spiral/Batch_Process_Cellomics_Mosaics.bsh', className='ij.plugin.Macro_Runner'
	items[638] = menu='File > Save As > Leica SP ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='leica.Leica_SP_Writer'
	items[639] = menu='Process > Enhance Contrast...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ContrastEnhancer'
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	items[641] = menu='Image > Adjust > Auto Threshold', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.threshold.Auto_Threshold'
	items[642] = menu='Plugins > Stitching > Pairwise stitching', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Stitching_Pairwise'
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	items[644] = menu='File > Import > Show Amira Surface', priority=0.0, enabled=true, pluginType=LegacyCommand, className='isosurface.AmiraSurface'
	items[645] = menu='Edit > Selection > Image to Selection...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='image-roi', className='ij.plugin.OverlayCommands'
	items[646] = menu='Help > Report a Bug', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Bug_Submitter.Bug_Submitter'
	items[647] = menu='Image > Stacks > Tools  > Grouped Z Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.GroupedZProjector'
	items[648] = menu='File > Save As > Tiff...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tiff', className='ij.plugin.filter.Writer'
	items[649] = menu='Edit > Selection > Area to Line', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='toline', className='ij.plugin.Selection'
	items[650] = menu='Plugins > Segmentation > Robust Automatic Threshold Selection', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RATS_'
	items[651] = menu='File > Open Samples > First-instar brain (6.3MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/first-instar-brain.zip', className='ij.plugin.URLOpener'
	items[652] = menu='File > Import > TrakEM2 XML...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ini.trakem2.Open_Project'
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	items[654] = menu='Image > Color > RGB to Luminance', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.RGB_to_Luminance'
	items[655] = menu='Plugins > Process > Median (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Median_'
	items[656] = menu='Image > Stacks > Reslice [/]...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Slicer'
	items[657] = menu='File > Open Samples > Sintered Alumina (2.6MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/Sintered_Alumina.tif.zip', className='ij.plugin.URLOpener'
	items[658] = menu='Image > Stacks > Dynamic Reslice', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.stacks.Dynamic_Reslice'
	items[659] = menu='Image > Stacks > Tools  > Combine...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.StackCombiner'
	items[660] = menu='Plugins > Scripting > Open Source for Menu Item', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.scripting.OpenSourceForMenuItem'
	items[661] = menu='Plugins > Analyze > Delaunay Voronoi', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Delaunay_Voronoi'
	items[662] = menu='Process > Noise > RandomJ > RandomJ Gaussian', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Gaussian'
	items[663] = menu='Image > Stacks > Tools  > Insert...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.StackInserter'
	items[664] = menu='File > New > Internal Clipboard', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='show', className='ij.plugin.Clipboard'
	items[665] = menu='Image > Stacks > Tools  > Make Substack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.SubstackMaker'
	items[666] = menu='Image > Video Editing > Draw Roi', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Draw_Roi'
	items[667] = menu='Process > Filters > Differentials', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Differentials_'
	items[668] = menu='Edit > Selection > Fill ROI holes', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Fill_holes'
	items[669] = menu='Plugins > Color Inspector 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Color_Inspector_3D'
	items[670] = menu='Plugins > Utilities > Control Panel...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ControlPanel'
	items[671] = menu='Image > Stacks > Z Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ZProjector'
	items[672] = menu='File > Open Samples > Cardio (768K, RGB DICOM)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cardio.dcm.zip', className='ij.plugin.URLOpener'
	items[673] = menu='Image > Color > Split Channels', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ChannelSplitter',null,null), called from non-EDT Thread:null
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false
	items[0] = menu='Plugins > Skeleton > Skeletonize (2D/3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Skeletonize3D_.Skeletonize3D_'
	items[1] = menu='Plugins > Transform > TransformJ > TransformJ Translate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Translate'
	items[2] = menu='Process > Filters > Median 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='median', className='ij.plugin.Filters3D'
	items[3] = menu='Plugins > Examples > Delayed Snapshot Window', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Delayed_Snapshot_Window.bsh', className='ij.plugin.Macro_Runner'
	items[4] = menu='Analyze > Tools > Sync Windows', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sync_Windows'
	items[5] = menu='File > Open Samples > Bat Cochlea Renderings (449K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='bat-cochlea-renderings.zip', className='ij.plugin.URLOpener'
	items[6] = menu='Plugins > Process > Convolve (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Convolve_3d'
	items[7] = menu='Plugins > Utilities > ImageJ Properties...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.JavaProperties'
	items[8] = menu='Plugins > Process > IFT (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.IFT_'
	items[9] = menu='Plugins > Segmentation > Balloon', priority=0.0, enabled=true, pluginType=LegacyCommand, className='BalloonSegmentation_'
	items[10] = menu='Analyze > Colocalization > Coloc 2', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Coloc_2'
	items[11] = menu='Plugins > Scripting > Refresh Javas', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.scripting.java.Refresh_Javas'
	items[12] = menu='Analyze > QuickPALM > Analyse Particles', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Analyse_Particles'
	items[13] = menu='Image > Stacks > Tools  > Slice Keeper', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Slice_Keeper'
	items[14] = menu='Image > Type > HSB Stack', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='HSB Stack', className='ij.plugin.Converter'
	items[15] = menu='Plugins > Macros > Bulls Eye', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/Bulls_Eye.txt', className='ij.plugin.Macro_Runner'
	items[16] = menu='Plugins > Examples > Edit LUT As Text', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Edit_LUT_As_Text.py', className='ij.plugin.Macro_Runner'
	items[17] = menu='Process > Filters > Variance 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='var', className='ij.plugin.Filters3D'
	items[18] = menu='Plugins > Stitching > deprecated > Stitch Collection of Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Collection'
	items[19] = menu='Analyze > Gels > Reset', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='reset', className='ij.plugin.GelAnalyzer'
	items[20] = menu='Analyze > Distribution...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Distribution'
	items[21] = menu='Plugins > Process > Show Color Surfaces', priority=0.0, enabled=true, pluginType=LegacyCommand, className='isosurface.Show_Colour_Surfaces'
	items[22] = menu='Process > Noise > RandomJ > RandomJ Panel', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Panel'
	items[23] = menu='Plugins > Utilities > IJ Robot', priority=0.0, enabled=true, pluginType=LegacyCommand, className='IJ_Robot'
	items[24] = menu='Plugins > Process > Shape-based averaging', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Rohlfing_SBA'
	items[25] = menu='Plugins > Bio-Formats > Bio-Formats Importer', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=false ', className='loci.plugins.LociImporter'
	items[26] = menu='Window > Cascade', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cascade', className='ij.plugin.WindowOrganizer'
	items[27] = menu='File > Import > Reconstruct Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='reconstructreader.reconstruct.Reconstruct_Reader'
	items[28] = menu='Plugins > Integral Image Filters > Normalize Local Contrast', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.NormalizeLocalContrast'
	items[29] = menu='File > New > TrakEM2 (blank)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='blank', className='ini.trakem2.New_Project'
	items[30] = menu='Image > Annotate > Arrow ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.util.ArrowTool'
	items[31] = menu='Plugins > Stitching > deprecated > Stitch Grid of Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Grid'
	items[32] = menu='Plugins > Image5D > Duplicate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Duplicate_Image5D'
	items[33] = menu='Plugins > Tracking > MTrack2 ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrack2_'
	items[34] = menu='Plugins > Transform > TransformJ > TransformJ Rotate', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Rotate'
	items[35] = menu='Plugins > Example02 CallCommand', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Example02_CallCommand'
	items[36] = menu='Analyze > Optic Flow > FlowJ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FlowJ_'
	items[37] = menu='Process > Image Expression Parser', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.process.Image_Expression_Parser'
	items[38] = menu='Plugins > Examples > downsample ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/downsample_.js', className='ij.plugin.Macro_Runner'
	items[39] = menu='Image > Color > Edit LUT...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.LUT_Editor'
	items[40] = menu='File > Import > QuickPALM >  Open VirtualStack', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Fast_VirtualStack_Opener.txt', className='QuickPALM.Run_MyMacro'
	items[41] = menu='Image > Type > 8-bit Color', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='8-bit Color', className='ij.plugin.Converter'
	items[42] = menu='Help > Refresh Menus', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='menus', className='ij.plugin.ImageJ_Updater'
	items[43] = menu='Edit > Selection > Select Bounding Box', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.selection.Select_Bounding_Box'
	items[44] = menu='Process > Filters > Minimum...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='min', className='ij.plugin.filter.RankFilters'
	items[45] = menu='File > Save As > Icns ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Icns_Writer'
	items[46] = menu='Analyze > TopoJ > Remove Slope', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Remove_Slope'
	items[47] = menu='Analyze > 3D Surface Plot', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Interactive_3D_Surface_Plot'
	items[48] = menu='Plugins > Utilities > Monitor Memory...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.MemoryMonitor'
	items[49] = menu='Plugins > Utilities > Thread killer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Thread_Killer'
	items[50] = menu='Plugins > Transform > Interactive Perspective', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Perspective'
	items[51] = menu='Process > Batch > Convert...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.BatchConverter'
	items[52] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Panel', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Panel'
	items[53] = menu='Plugins > Segmentation > Apply saved SIOX segmentator', priority=0.0, enabled=true, pluginType=LegacyCommand, className='siox.Load_Segmentation'
	items[54] = menu='File > Open Samples > Confocal Series (2.2MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='confocal-series.zip', className='ij.plugin.URLOpener'
	items[55] = menu='Plugins > Optic Flow > Integral Block MSE', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.MSEBlockFlow'
	items[56] = menu='Plugins > Examples > list all threads', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/list_all_threads.py', className='ij.plugin.Macro_Runner'
	items[57] = menu='Image > Type > RGB Color', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='RGB Color', className='ij.plugin.Converter'
	items[58] = menu='File > Save As > LSS16 ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.LSS16_Writer'
	items[59] = menu='Image > Stacks > Statistics', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Stack_Statistics'
	items[60] = menu='Plugins > Stacks > Average Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='vib.Average_Images'
	items[61] = menu='File > Save As > PNM ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='PNM', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
	items[62] = menu='File > Import > Text Image... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.TextReader'
	items[63] = menu='Plugins > Utilities > Search...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='search', className='ij.plugin.SimpleCommands'
	items[64] = menu='Plugins > Scripts > File > Make Screencast', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Scripts/File/Make_Screencast.bsh', className='ij.plugin.Macro_Runner'
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	items[67] = menu='File > Import > TorstenRaw GZ Reader...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.TorstenRaw_GZ_Reader'
	items[68] = menu='File > Import > Results... ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='import', className='ij.plugin.SimpleCommands'
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	items[72] = menu='Analyze > Sholl Analysis...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sholl_Analysis'
	items[73] = menu='Process > Subtract Background...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.BackgroundSubtracter'
	items[74] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Options'
	items[75] = menu='Plugins > New  > Macro Tool', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='macro-tool', className='ij.plugin.NewPlugin'
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	items[77] = menu='Help > About Plugins > About This Submenu...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='ij.plugin.SimpleCommands'
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	items[79] = menu='File > Open Samples > Boats (356K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='boats.gif', className='ij.plugin.URLOpener'
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	items[85] = menu='File > Open Samples > Clown (14K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='clown.jpg', className='ij.plugin.URLOpener'
	items[86] = menu='Process > Calculator Plus', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Calculator_Plus'
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	items[88] = menu='Plugins > Image5D > RGB to Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RGB_to_Image5D'
	items[89] = menu='Help > About Plugins > About TrakEM2...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ini.trakem2.utils.Utils'
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	items[92] = menu='File > Import > Amira...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='AmiraMeshReader_'
	items[93] = menu='Image > Adjust > Canvas Size...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.CanvasResizer'
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	items[98] = menu='Plugins > Scripting > Refresh BSH Scripts', priority=0.0, enabled=true, pluginType=LegacyCommand, className='BSH.Refresh_BSH_Scripts'
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	items[102] = menu='Process > Noise > RandomJ > RandomJ Uniform', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Uniform'
	items[103] = menu='Analyze > Tools > Save XY Coordinates...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.XYCoordinates'
	items[104] = menu='File > Save As > Compressed TIFF ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='TIFF', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
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	items[107] = menu='File > Import > URL...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.URLOpener'
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	items[109] = menu='Plugins > Feature Extraction > FeatureJ > FeatureJ Structure', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FJ_Structure'
	items[110] = menu='Image > Hyperstacks > Re-order Hyperstack ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.stacks.Hyperstack_rearranger'
	items[111] = menu='File > Save As > Jpeg...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='jpeg', className='ij.plugin.filter.Writer'
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	items[114] = menu='Plugins > Image5D > Open Series As Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Open_Series_As_Image5D'
	items[115] = menu='Window > Show All', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='show', className='ij.plugin.WindowOrganizer'
	items[116] = menu='Plugins > Bio-Formats > Help', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://www.openmicroscopy.org/site/support/bio-formats/users/index.html', className='ij.plugin.BrowserLauncher'
	items[117] = menu='Plugins > Examples > TrakEM2_Example_Scripts > Measure AreaLists', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py', className='ij.plugin.Macro_Runner'
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	items[277] = menu='File > Open Samples > MRI Stack (528K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='mri-stack.zip', className='ij.plugin.URLOpener'
	items[278] = menu='File > Import > Open [Image IO]', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='simple', className='net.sf.ij.plugin.ImageIOOpenPlugin'
	items[279] = menu='Edit > Selection > Convex Hull', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='hull', className='ij.plugin.Selection'
	items[280] = menu='Analyze > QuickPALM > Create 3D calibration (requires astigmatism)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Create_3D_calibration'
	items[281] = menu='Plugins > Examples > Spheres and Tubes in 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='customnode.Mesh_Maker'
	items[282] = menu='Plugins > Image5D > Set Channel Display', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Set_Channel_Display'
	items[283] = menu='File > Open Samples > Gel (105K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='gel.gif', className='ij.plugin.URLOpener'
	items[284] = menu='Plugins > Utilities > Fiji > New Fiji News', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='news', className='fiji.Wiki_Editor'
	items[285] = menu='Analyze > Analyze Particles...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.ParticleAnalyzer'
	items[286] = menu='Plugins > Process > Find Connected Regions', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.Find_Connected_Regions'
	items[287] = menu='Plugins > Transform > TransformJ > TransformJ Panel', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Panel'
	items[288] = menu='Plugins > Process > Show label centers', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Show_Label_Centers'
	items[289] = menu='Process > Find Maxima...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.MaximumFinder'
	items[290] = menu='Plugins > New  > Plugin Frame', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='frame', className='ij.plugin.NewPlugin'
	items[291] = menu='Image > Video Editing > New Video', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.New_Video'
	items[292] = menu='Process > Noise > Despeckle', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='despeckle', className='ij.plugin.filter.RankFilters'
	items[293] = menu='Image > Stacks > Kalman Stack Filter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Kalman_Filter'
	items[294] = menu='Analyze > Local Thickness > Local Thickness to Cleaned-Up Local Thickness', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='run', className='Clean_Up_Local_Thickness'
	items[295] = menu='File > Import > Animated Gif...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Animated_Gif_Reader'
	items[296] = menu='File > Import > DF3...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Open_DF3'
	items[297] = menu='Process > Noise > RandomJ > RandomJ Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Options'
	items[298] = menu='File > Open Samples > Shepp-Logan Phantom (Plugin)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='SheppLogan_'
	items[299] = menu='Help > About Plugins > About Sholl Analysis...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='Sholl_Utils'
	items[300] = menu='Plugins > Scripting > Clojure Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Clojure.Clojure_Interpreter'
	items[301] = menu='Image > Adjust > Bleach Correction', priority=0.0, enabled=true, pluginType=LegacyCommand, className='emblcmci.BleachCorrection'
	items[302] = menu='Analyze > Colocalization > Colocalization Test', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Colocalisation_Test'
	items[303] = menu='File > Import > XY Coordinates... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.XY_Reader'
	items[304] = menu='Image > Video Editing > Insert Stack', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Insert_Stack'
	items[305] = menu='Plugins > Shortcuts > Install Plugin...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Installer'
	items[306] = menu='File > Import > SVG...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.SVG_Reader'
	items[307] = menu='Plugins > Process > Exact Signed Euclidean Distance Transform (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.process3d.SEDT'
	items[308] = menu='Plugins > Bio-Formats > Update Bio-Formats Plugins', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.Updater'
	items[309] = menu='Plugins > Process > Exact Euclidean Distance Transform (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.process3d.EDT'
	items[310] = menu='Edit > Selection > Scale... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.RoiScaler'
	items[311] = menu='Plugins > Shortcuts > Remove...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='remove', className='ij.plugin.Hotkeys'
	items[312] = menu='Plugins > Examples > compose rgb-stacks', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/compose_rgb-stacks.bsh', className='ij.plugin.Macro_Runner'
	items[313] = menu='Plugins > Feature Extraction > Extract SIFT Correspondences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='SIFT_ExtractPointRoi'
	items[314] = menu='Plugins > SPIM Registration > Bead-based registration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.Bead_Registration'
	items[315] = menu='File > Open Samples > Particles (75K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='particles.gif', className='ij.plugin.URLOpener'
	items[316] = menu='File > Save As > ICO ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.ICO_Writer'
	items[317] = menu='Help > About Plugins > TransformJ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Website'
	items[318] = menu='Analyze > Tools > Analyze Line Graph', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.LineGraphAnalyzer'
	items[319] = menu='File > Save As > Analyze... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Analyze_Writer'
	items[320] = menu='Plugins > Examples > chess ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/chess_.py', className='ij.plugin.Macro_Runner'
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	items[322] = menu='Plugins > OMERO > Connect to OMERO', priority=0.0, enabled=true, pluginType=LegacyCommand, className='org.openmicroscopy.shoola.MainIJPlugin'
	items[323] = menu='Plugins > Examples > CoverMaker > Cover Maker', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/CoverMaker/Cover_Maker.py', className='ij.plugin.Macro_Runner'
	items[324] = menu='Image > Stacks > Tools  > Stack Splitter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stack_Splitter'
	items[325] = menu='Analyze > QuickPALM > About...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='About_.txt', className='QuickPALM.Run_MyMacro'
	items[326] = menu='Plugins > Process > Fast FFT (2D/3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='registration3d.Fast_FourierTransform'
	items[327] = menu='Help > Macros...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/macros/', className='ij.plugin.BrowserLauncher'
	items[328] = menu='Plugins > Transform > Interactive Rigid', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Transform_Rigid'
	items[329] = menu='Process > Binary > Outline', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='outline', className='ij.plugin.filter.Binary'
	items[330] = menu='Analyze > QuickPALM > Fast VirtualStack Opener', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Fast_VirtualStack_Opener.txt', className='QuickPALM.Run_MyMacro'
	items[331] = menu='Process > Filters > Show Circular Masks...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='masks', className='ij.plugin.filter.RankFilters'
	items[332] = menu='Plugins > Transform > TransformJ > TransformJ Turn', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Turn'
	items[333] = menu='Edit > Selection > Create Selection', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='from', className='ij.plugin.Selection'
	items[334] = menu='File > Import > Icns...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Icns_Reader'
	items[335] = menu='Image > Transform > Image to Results', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='itor', className='ij.plugin.SimpleCommands'
	items[336] = menu='Plugins > SPIM Registration > deprecated > Advanced Registration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='SPIM_Registration_File'
	items[337] = menu='File > Open Samples > AuPbSn 40 (56K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='AuPbSn40.jpg', className='ij.plugin.URLOpener'
	items[338] = menu='Image > Color > Simulate Color Blindness', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Dichromacy_'
	items[339] = menu='Plugins > Analyze > Visual grep', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Visual_Grep'
	items[340] = menu='Process > Morphology > Gray Morphology', priority=0.0, enabled=true, pluginType=LegacyCommand, className='GrayMorphology_'
	items[341] = menu='Plugins > Tracking > MTrackJ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrackJ_'
	items[342] = menu='Image > Stacks > Tools  > Remove Slice Labels', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='remove', className='ij.plugin.SimpleCommands'
	items[343] = menu='Image > Adjust > Window/Level...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='wl', className='ij.plugin.frame.ContrastAdjuster'
	items[344] = menu='File > Import > Nrrd ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Nrrd_Reader'
	items[345] = menu='Image > Color > RGB to CIELAB', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RGB_to_CIELAB'
	items[346] = menu='Plugins > Optic Flow > Integral Block PMCC', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.PMCCBlockFlow'
	items[347] = menu='Plugins > Volume Viewer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.volumeviewer.Volume_Viewer'
	items[348] = menu='Image > Hyperstacks > New Hyperstack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.HyperStackMaker'
	items[349] = menu='Process > Filters > Variance...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='variance', className='ij.plugin.filter.RankFilters'
	items[350] = menu='Image > Hyperstacks > Reduce Dimensionality...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.HyperStackReducer'
	items[351] = menu='Plugins > Utilities > Collect Garbage', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CollectGarbage_'
	items[352] = menu='Plugins > Utilities > Debugging > Test Marching Cubes', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MC_Test'
	items[353] = menu='Plugins > Process > Laplace (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Laplace_'
	items[354] = menu='File > Import > ICO...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.ICO_Reader'
	items[355] = menu='Plugins > Analyze > Find differences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='FindIt_'
	items[356] = menu='Plugins > Scripting > Jython Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Jython.Jython_Interpreter'
	items[357] = menu='Analyze > Set Measurements...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='set', className='ij.plugin.filter.Analyzer'
	items[358] = menu='Process > Noise > RandomJ > RandomJ Binomial', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Binomial'
	items[359] = menu='Plugins > Utilities > Monitor Events...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.EventListener'
	items[360] = menu='Help > Documentation...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/docs', className='ij.plugin.BrowserLauncher'
	items[361] = menu='Analyze > Tools > Sync Measure 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Sync_Measure_3D'
	items[362] = menu='Edit > Selection > Straighten...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Straightener'
	items[363] = menu='File > Import > MRC Leginon ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Open_MRC_Leginon'
	items[364] = menu='Image > Stacks > 3D Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Projector'
	items[365] = menu='Plugins > Stitching > deprecated > Stitch Directory with Images (unknown configuration)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Directory'
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	items[367] = menu='Plugins > Process > Replace value', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Replace_Value'
	items[368] = menu='Process > Noise > Remove NaNs...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='nan', className='ij.plugin.filter.RankFilters'
	items[369] = menu='File > Open Samples > Bat Cochlea Volume (19K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='bat-cochlea-volume.zip', className='ij.plugin.URLOpener'
	items[370] = menu='Plugins > Tracking > Manual Tracking', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Manual_Tracking'
	items[371] = menu='Analyze > QuickPALM > Correct Particles Drift (based on ROI)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Correct_Drift2'
	items[372] = menu='Image > Video Editing > Add Empty Frame', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Add_Empty_Frame'
	items[373] = menu='Plugins > Macros > Run...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Macro_Runner'
	items[374] = menu='File > Import > QuickPALM >  Load Particles (.tif file - fast)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Load_particles_tableFromImg'
	items[375] = menu='Plugins > Segmentation > deprecated > Advanced Weka Segmentation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='trainableSegmentation.Weka_Segmentation'
	items[376] = menu='Plugins > 3D Viewer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ImageJ_3D_Viewer'
	items[377] = menu='Plugins > Segmentation > deprecated > Trainable Segmentation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='trainableSegmentation.Trainable_Segmentation'
	items[378] = menu='File > Import > SPIM', priority=0.0, enabled=true, pluginType=LegacyCommand, className='spimopener.SPIM_Opener'
	items[379] = menu='Plugins > Examples > Extended Profile Plot', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Extended_Profile_Plot.bsh', className='ij.plugin.Macro_Runner'
	items[380] = menu='Image > Color > Dichromacy', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Dichromacy_'
	items[381] = menu='Help > About Plugins > Image IO ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='net.sf.ij.plugin.AboutImageIO'
	items[382] = menu='Plugins > Utilities > Fiji > New Fiji Wiki Screenshot', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='screenshot', className='fiji.Wiki_Editor'
	items[383] = menu='File > Save As > FITS...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='fits', className='ij.plugin.filter.Writer'
	items[384] = menu='File > Open Samples > TEM Filter (112K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='TEM_filter_sample.jpg', className='ij.plugin.URLOpener'
	items[385] = menu='Plugins > Bio-Formats > Bio-Formats Windowless Importer', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=true ', className='loci.plugins.LociImporter'
	items[386] = menu='Help > About Plugins > MTrackJ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='MTrackJ_Website'
	items[387] = menu='Plugins > Bio-Formats > Bio-Formats Plugins Configuration', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.config.LociConfig'
	items[388] = menu='File > Import > PDF ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.PDF_Viewer'
	items[389] = menu='File > Import > Amira as TrakEM2...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='amira', className='ini.trakem2.New_Project'
	items[390] = menu='Plugins > New  > Table...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='table', className='ij.plugin.NewPlugin'
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	items[392] = menu='Process > Filters > Median...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='median', className='ij.plugin.filter.RankFilters'
	items[393] = menu='Plugins > SPIM Registration > Multi-view deconvolution', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.plugin.Multi_View_Deconvolution'
	items[394] = menu='Help > About Plugins > Bio-Formats Plugins...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.About'
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	items[396] = menu='Plugins > Scripting > Javascript Interpreter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Javascript.Javascript_Interpreter'
	items[397] = menu='Analyze > QuickPALM > Stop Analyse Particles (kills the threads)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='QuickPALM.Stop_processing'
	items[398] = menu='Plugins > Transform > TransformJ > TransformJ Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='TJ_Options'
	items[399] = menu='Plugins > Examples > Fiji Logo 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Fiji_Logo_3D.js', className='ij.plugin.Macro_Runner'
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	items[401] = menu='Image > Video Editing > Make Transition', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Make_Transition'
	items[402] = menu='Analyze > Directionality', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.analyze.directionality.Directionality_'
	items[403] = menu='Plugins > Image5D > Z Project', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Z_Project'
	items[404] = menu='Plugins > Integral Image Filters > Standard Deviation', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.StandardDeviation'
	items[405] = menu='File > Open Samples > Line Graph (21K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='LineGraph.jpg', className='ij.plugin.URLOpener'
	items[406] = menu='File > Import > Image Sequence...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.FolderOpener'
	items[407] = menu='Analyze > 3D OC Options', priority=0.0, enabled=true, pluginType=LegacyCommand, className='_3D_OC_Options'
	items[408] = menu='Plugins > Macros > Install...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.MacroInstaller'
	items[409] = menu='Plugins > Image5D > Make Montage', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Make_Montage'
	items[410] = menu='Plugins > Process > Mask Of Nearby Points', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.Mask_Of_Nearby_Points'
	items[411] = menu='Image > Video Editing > Open Video', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Open_Video'
	items[412] = menu='Image > Color > Retinex', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Retinex_'
	items[413] = menu='File > Open Samples > Embryos (42K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='embryos.jpg', className='ij.plugin.URLOpener'
	items[414] = menu='Help > About Plugins > LSMToolbox...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='LSM_Toolbox'
	items[415] = menu='Help > Dev. Resources...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/developer/index.html', className='ij.plugin.BrowserLauncher'
	items[416] = menu='Image > Drawing > Linear Gradient', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.drawing.Linear_Gradient'
	items[417] = menu='Plugins > spiral > Batch Process Cellomics Timeseries Mosaics', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spiral/Batch_Process_Cellomics_Timeseries_Mosaics.bsh', className='ij.plugin.Macro_Runner'
	items[418] = menu='File > Open Samples > CT (420K, 16-bit DICOM)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='ct.dcm.zip', className='ij.plugin.URLOpener'
	items[419] = menu='Plugins > Integral Image Filters > Sample Variance', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.SampleVariance'
	items[420] = menu='Plugins > Bio-Formats > Bio-Formats Macro Extensions', priority=0.0, enabled=true, pluginType=LegacyCommand, className='loci.plugins.macro.LociFunctions'
	items[421] = menu='Edit > Cut', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cut', className='ij.plugin.Clipboard'
	items[422] = menu='Analyze > Shape Index Map', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.geom.Shape_Index_Map'
	items[423] = menu='Process > Batch > Macro... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.BatchProcessor'
	items[424] = menu='Plugins > Scripting > Refresh Macros', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CLI.Refresh_Macros'
	items[425] = menu='File > Import > Analyze...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Analyze_Reader'
	items[426] = menu='Help > Mailing List...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='https://list.nih.gov/archives/imagej.html', className='ij.plugin.BrowserLauncher'
	items[427] = menu='Plugins > Segmentation > Segmentation Editor', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Segmentation_Editor'
	items[428] = menu='Plugins > Compile and Run...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Compiler'
	items[429] = menu='Plugins > New  > Macro', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='macro', className='ij.plugin.NewPlugin'
	items[430] = menu='Edit > Selection > Make Inverse', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='inverse', className='ij.plugin.Selection'
	items[431] = menu='Plugins > Registration > Descriptor-based series registration (2d/3d + t)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Descriptor_based_series_registration'
	items[432] = menu='Plugins > New  > JavaScript', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='javascript', className='ij.plugin.NewPlugin'
	items[433] = menu='Plugins > Registration > Moving Least Squares', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Moving_Least_Squares'
	items[434] = menu='Image > Color > Display LUTs', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='display', className='ij.plugin.SimpleCommands'
	items[435] = menu='Image > Adjust > Line Width... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.LineWidthAdjuster'
	items[436] = menu='Plugins > Utilities > Fiji > New Fiji Tutorial', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tutorial-maker', className='fiji.Wiki_Editor'
	items[437] = menu='File > Open Samples > Tracks for TrackMate (807K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/FakeTracks.tif', className='ij.plugin.URLOpener'
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	items[452] = menu='Plugins > Feature Extraction > Extract Block Matching Correspondences', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.BlockMatching_ExtractPoinRoi'
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	items[457] = menu='Process > FFT > FFT Options...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='options', className='ij.plugin.FFT'
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	items[461] = menu='Analyze > Plot Profile', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='plot', className='ij.plugin.Profiler'
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	items[463] = menu='File > Open Next', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.NextImageOpener'
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	items[483] = menu='File > Page Setup...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='setup', className='ij.plugin.filter.Printer'
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	items[486] = menu='File > Import > FIB-SEM ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.FIBSEM_Reader'
	items[487] = menu='File > Open Samples > Fly Brain (1MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='flybrain.zip', className='ij.plugin.URLOpener'
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	items[490] = menu='File > Import > Open with preview ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='preview', className='net.sf.ij.plugin.ImageIOOpenPlugin'
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	items[492] = menu='File > Save As > Animated Gif ... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Gif_Stack_Writer'
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	items[498] = menu='File > Import > Raw...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Raw'
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	items[501] = menu='Plugins > Process > Bilateral Filter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Bilateral_Filter'
	items[502] = menu='File > New > TrakEM2 (from template)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ini.trakem2.New_Project'
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	items[504] = menu='Plugins > Image5D > Save Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Save_Image5D'
	items[505] = menu='Edit > Clear Outside', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='outside', className='ij.plugin.filter.Filler'
	items[506] = menu='Plugins > Registration > Manual landmark selection (3d)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Manual_Landmark_Selection'
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	items[508] = menu='File > Save As > ZIP...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='zip', className='ij.plugin.filter.Writer'
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	items[514] = menu='Analyze > Color Histogram', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ColorHistogram_'
	items[515] = menu='Plugins > Image5D > Virtual Image5D Opener', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Virtual_Image5D_Opener'
	items[516] = menu='Image > Adjust > Color Threshold...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.ColorThresholder'
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	items[521] = menu='Plugins > Process > Smooth (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Smooth_'
	items[522] = menu='File > Import > Leica SP...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='leica.Leica_SP_Reader'
	items[523] = menu='Image > Stacks > Radial Reslice', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.stacks.Radial_Reslice'
	items[524] = menu='Plugins > Registration > Elastic > Elastic Montaging', priority=0.0, enabled=true, pluginType=LegacyCommand, className='mpicbg.ij.plugin.ElasticMontage'
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	items[530] = menu='File > New > Hyperstack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.HyperStackMaker'
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	items[539] = menu='Plugins > Stitching > deprecated > Stitch Sequence of Grids of Images', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Image_Grid_Sequence'
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	items[568] = menu='File > Import > Bio-Formats', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='location=[Local machine] windowless=false ', className='loci.plugins.LociImporter'
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	items[570] = menu='Image > Stacks > Make Montage...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.MontageMaker'
	items[571] = menu='Plugins > Stitching > deprecated > Stitch Multiple Series or Tile Scan File', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stitch_Multiple_Series_File'
	items[572] = menu='Image > Stacks > Tools  > Interleave', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Stack_Interleaver'
	items[573] = menu='Plugins > Macros > MRI Microtubules Tools', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/MRI_Microtubules_Tools.ijm', className='ij.plugin.Macro_Runner'
	items[574] = menu='Help > Fiji Wiki', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/', className='ij.plugin.BrowserLauncher'
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	items[578] = menu='Plugins > Transform > Distortion Correction', priority=0.0, enabled=true, pluginType=LegacyCommand, className='lenscorrection.Distortion_Correction'
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	items[580] = menu='Plugins > Examples > TrakEM2_Example_Scripts > Homogenize Ball Radius', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/TrakEM2_Example_Scripts/Homogenize_Ball_Radius.py', className='ij.plugin.Macro_Runner'
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	items[585] = menu='Image > Color > Replace Red with Magenta (system clipboard)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.color.Convert_Red_To_Magenta_Clipboard'
	items[586] = menu='Plugins > Image5D > Hypervolume Opener', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Hypervolume_Opener'
	items[587] = menu='File > Save As > Text Image...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='text', className='ij.plugin.filter.Writer'
	items[588] = menu='File > Save As > DF3 ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Save_DF3'
	items[589] = menu='Process > FFT > Redisplay Power Spectrum', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='redisplay', className='ij.plugin.FFT'
	items[590] = menu='Process > FFT > FD Math...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.FFTMath'
	items[591] = menu='File > Open Samples > Cell Colony (31K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Cell_Colony.jpg', className='ij.plugin.URLOpener'
	items[592] = menu='File > Save As > Results...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.MeasurementsWriter'
	items[593] = menu='File > Open Samples > Blobs (25K)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='blobs.gif', className='ij.plugin.URLOpener'
	items[594] = menu='Image > Overlay > List Elements', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='list', className='ij.plugin.OverlayCommands'
	items[595] = menu='File > Open Samples > Organ of Corti (2.8M, 4D stack)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='organ-of-corti.zip', className='ij.plugin.URLOpener'
	items[596] = menu='Plugins > Utilities > Debugging > Test Java3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Test_Java3D'
	items[597] = menu='Plugins > Install... ', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.PluginInstaller'
	items[598] = menu='Help > About Plugins > About bUnwarpJ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='bunwarpj.Credits'
	items[599] = menu='Plugins > Image5D > Open Image5D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Open_Image5D'
	items[600] = menu='Image > Stacks > View5D > start viewer', priority=0.0, enabled=true, pluginType=LegacyCommand, className='view5d.View5D_'
	items[601] = menu='Plugins > Analyze > Surfaceness', priority=0.0, enabled=true, pluginType=LegacyCommand, className='features.Surfaceness_'
	items[602] = menu='Analyze > Local Thickness > Local Thickness (complete process)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='run', className='Local_Thickness_Driver'
	items[603] = menu='Process > Batch > Virtual Stack...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='stack', className='ij.plugin.BatchProcessor'
	items[604] = menu='Process > Filters > Maximum 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='max', className='ij.plugin.Filters3D'
	items[605] = menu='Analyze > Tools > Calibration Bar...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.CalibrationBar'
	items[606] = menu='Image > Type > RGB Stack', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='RGB Stack', className='ij.plugin.Converter'
	items[607] = menu='File > Save As > EPS ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='io.Export_EPS'
	items[608] = menu='Plugins > Examples > Image To Tool Icon', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Image_To_Tool_Icon.bsh', className='ij.plugin.Macro_Runner'
	items[609] = menu='Image > Adjust > Auto Crop (guess background color)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='autoautocrop', className='fiji.selection.Select_Bounding_Box'
	items[610] = menu='Plugins > Utilities > Reset...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='reset', className='ij.plugin.SimpleCommands'
	items[611] = menu='File > Import > AVI...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.AVI_Reader'
	items[612] = menu='Process > Filters > Minimum 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='min', className='ij.plugin.Filters3D'
	items[613] = menu='Plugins > Registration > StackReg', priority=0.0, enabled=true, pluginType=LegacyCommand, className='StackReg_'
	items[614] = menu='Plugins > Registration > Descriptor-based registration (2d/3d)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Descriptor_based_registration'
	items[615] = menu='Plugins > Utilities > Slide Show', priority=0.0, enabled=true, pluginType=LegacyCommand, className='CLI.Slide_Show'
	items[616] = menu='Image > Stacks > Tools  > Deinterleave', priority=0.0, enabled=true, pluginType=LegacyCommand, className='DeInterleave_'
	items[617] = menu='Image > Stacks > Series Labeler', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Series_Labeler'
	items[618] = menu='Image > Lookup Tables > Apply LUT', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.LutApplier'
	items[619] = menu='Help > Installation...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='install', className='ij.plugin.SimpleCommands'
	items[620] = menu='Help > Macro Functions...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://imagej.nih.gov/ij/developer/macro/functions.html', className='ij.plugin.BrowserLauncher'
	items[621] = menu='Plugins > Registration > Register Virtual Stack Slices', priority=0.0, enabled=true, pluginType=LegacyCommand, className='register_virtual_stack.Register_Virtual_Stack_MT'
	items[622] = menu='Plugins > Examples > Add Popup Split Channels', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Examples/Add_Popup_Split_Channels.bsh', className='ij.plugin.Macro_Runner'
	items[623] = menu='Process > Filters > Maximum...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='max', className='ij.plugin.filter.RankFilters'
	items[624] = menu='Image > Zoom > Scale to Fit', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='scale', className='ij.plugin.Zoom'
	items[625] = menu='File > Save As > BMP...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='bmp', className='ij.plugin.filter.Writer'
	items[626] = menu='Image > Stacks > Label...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.StackLabeler'
	items[627] = menu='Analyze > 3D Objects Counter', priority=0.0, enabled=true, pluginType=LegacyCommand, className='_3D_objects_counter'
	items[628] = menu='Edit > Selection > Fit Circle to Image', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.util.Circle_Fitter'
	items[629] = menu='Help > About Plugins > Sync Windows...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='about', className='Sync_Windows'
	items[630] = menu='Plugins > Macros > Polygon ', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/Polygon_.txt', className='ij.plugin.Macro_Runner'
	items[631] = menu='Plugins > Process > Extended Depth of Field (Easy mode)...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='EDF_Easy_'
	items[632] = menu='Plugins > Macros > RGB Histogram', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='Macros/RGB_Histogram.txt', className='ij.plugin.Macro_Runner'
	items[633] = menu='Help > Licenses', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/cgi-bin/gitweb.cgi?p=fiji.git;a=blob_plain;f=LICENSES;hb=HEAD', className='ij.plugin.BrowserLauncher'
	items[634] = menu='Process > Filters > Gaussian Blur 3D...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.GaussianBlur3D'
	items[635] = menu='Process > FFT > Custom Filter...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.filter.FFTCustomFilter'
	items[636] = menu='File > Save As > PNG ...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='PNG', className='net.sf.ij.plugin.ImageIOSaveAsPlugin'
	items[637] = menu='Plugins > spiral > Batch Process Cellomics Mosaics', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='spiral/Batch_Process_Cellomics_Mosaics.bsh', className='ij.plugin.Macro_Runner'
	items[638] = menu='File > Save As > Leica SP ...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='leica.Leica_SP_Writer'
	items[639] = menu='Process > Enhance Contrast...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ContrastEnhancer'
	items[640] = menu='Analyze > Tools > Curve Fitting...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.frame.Fitter'
	items[641] = menu='Image > Adjust > Auto Threshold', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.threshold.Auto_Threshold'
	items[642] = menu='Plugins > Stitching > Pairwise stitching', priority=0.0, enabled=true, pluginType=LegacyCommand, className='plugin.Stitching_Pairwise'
	items[643] = menu='File > Save As > Raw Data...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='raw', className='ij.plugin.filter.Writer'
	items[644] = menu='File > Import > Show Amira Surface', priority=0.0, enabled=true, pluginType=LegacyCommand, className='isosurface.AmiraSurface'
	items[645] = menu='Edit > Selection > Image to Selection...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='image-roi', className='ij.plugin.OverlayCommands'
	items[646] = menu='Help > Report a Bug', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Bug_Submitter.Bug_Submitter'
	items[647] = menu='Image > Stacks > Tools  > Grouped Z Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.GroupedZProjector'
	items[648] = menu='File > Save As > Tiff...', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='tiff', className='ij.plugin.filter.Writer'
	items[649] = menu='Edit > Selection > Area to Line', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='toline', className='ij.plugin.Selection'
	items[650] = menu='Plugins > Segmentation > Robust Automatic Threshold Selection', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RATS_'
	items[651] = menu='File > Open Samples > First-instar brain (6.3MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/first-instar-brain.zip', className='ij.plugin.URLOpener'
	items[652] = menu='File > Import > TrakEM2 XML...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ini.trakem2.Open_Project'
	items[653] = menu='Image > Color > Stack to RGB', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.RGBStackConverter'
	items[654] = menu='Image > Color > RGB to Luminance', priority=0.0, enabled=true, pluginType=LegacyCommand, className='util.RGB_to_Luminance'
	items[655] = menu='Plugins > Process > Median (3D)', priority=0.0, enabled=true, pluginType=LegacyCommand, className='process3d.Median_'
	items[656] = menu='Image > Stacks > Reslice [/]...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.Slicer'
	items[657] = menu='File > Open Samples > Sintered Alumina (2.6MB)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='http://fiji.sc/samples/Sintered_Alumina.tif.zip', className='ij.plugin.URLOpener'
	items[658] = menu='Image > Stacks > Dynamic Reslice', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.stacks.Dynamic_Reslice'
	items[659] = menu='Image > Stacks > Tools  > Combine...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.StackCombiner'
	items[660] = menu='Plugins > Scripting > Open Source for Menu Item', priority=0.0, enabled=true, pluginType=LegacyCommand, className='fiji.scripting.OpenSourceForMenuItem'
	items[661] = menu='Plugins > Analyze > Delaunay Voronoi', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Delaunay_Voronoi'
	items[662] = menu='Process > Noise > RandomJ > RandomJ Gaussian', priority=0.0, enabled=true, pluginType=LegacyCommand, className='RJ_Gaussian'
	items[663] = menu='Image > Stacks > Tools  > Insert...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.StackInserter'
	items[664] = menu='File > New > Internal Clipboard', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='show', className='ij.plugin.Clipboard'
	items[665] = menu='Image > Stacks > Tools  > Make Substack...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.SubstackMaker'
	items[666] = menu='Image > Video Editing > Draw Roi', priority=0.0, enabled=true, pluginType=LegacyCommand, className='video2.Draw_Roi'
	items[667] = menu='Process > Filters > Differentials', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Differentials_'
	items[668] = menu='Edit > Selection > Fill ROI holes', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Fill_holes'
	items[669] = menu='Plugins > Color Inspector 3D', priority=0.0, enabled=true, pluginType=LegacyCommand, className='Color_Inspector_3D'
	items[670] = menu='Plugins > Utilities > Control Panel...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ControlPanel'
	items[671] = menu='Image > Stacks > Z Project...', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ZProjector'
	items[672] = menu='File > Open Samples > Cardio (768K, RGB DICOM)', priority=0.0, enabled=true, pluginType=LegacyCommand, arg='cardio.dcm.zip', className='ij.plugin.URLOpener'
	items[673] = menu='Image > Color > Split Channels', priority=0.0, enabled=true, pluginType=LegacyCommand, className='ij.plugin.ChannelSplitter',null,null), called from non-EDT Thread:null
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false
	items[0] = 	Help
		ImageJ News...
		Documentation...
		Installation...
		Mailing List...
		Dev. Resources...
		Plugins...
		Macros...
		Macro Functions...
		Refresh Menus
		About Plugins
			About This Submenu...
			Bio-Formats Plugins...
			TransformJ...
			MTrackJ...
			LSMReader...
			Color Histogram...
			About Sholl Analysis...
			About bUnwarpJ...
			Sync Windows...
			Sync Measure 3D...
			Image5D...
			Robust Automatic Threshold Selection 
			LSMToolbox...
			FeatureJ...
			About TrakEM2...
			RandomJ...
			Image IO ...
			Gray Morphology...
		ImageJ Website...
		About ImageJ...
		Licenses
		Fiji Wiki
		Help on Menu Item
		Report a Bug
		Switch to Legacy Mode
		Update...
		Upload Sample Image
	items[1] = 	Window
		Show All
		Main Window [return]
		Put Behind [tab]
		Cascade
		Tile
		Tile Vertical
	items[2] = 	Process
		Smooth
		Sharpen
		Find Edges
		Find Maxima...
		Enhance Contrast...
		Noise
			Add Noise...
			Add Specified Noise...
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			Remove NaNs...
			ROF Denoise
			RandomJ
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				RandomJ Gamma
				RandomJ Gaussian
				RandomJ Options
				RandomJ Panel
				RandomJ Poisson
				RandomJ Uniform
			Noise Reduction
				Adaptive Median
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				Contraharmonic Mean
				Geometric Mean
				Harmonic Mean
				Maximum
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				Median
				Midpoint
				Minimum
				Trimmed Mean
		Binary
			Outline
			Fill Holes
			Skeletonize
			Distance Map
			Ultimate Points
			Watershed
			Voronoi
			Options...
			Binarize...
			Close
			Create Mask...
			Dilate
			Erode
			Make Binary...
			Make Mask Overlay...
			Open
		FFT
			FFT
			Inverse FFT
			Redisplay Power Spectrum
			FFT Options...
			Bandpass Filter...
			Custom Filter...
			FD Math...
			Swap Quadrants
		Filters
			Convolve...
			Median...
			Mean...
			Minimum...
			Maximum...
			Unsharp Mask...
			Variance...
			Gaussian Blur 3D...
			Median 3D...
			Mean 3D...
			Minimum 3D...
			Maximum 3D...
			Variance 3D...
			Show Circular Masks...
			Linear Kuwahara
			Differentials
			Gaussian Blur...
		Batch
			Measure...
			Convert...
			Macro... 
			Virtual Stack...
		Image Calculator...
		Subtract Background...
		Enhance Local Contrast (CLAHE)
		Calculator Plus
		Image Expression Parser
		Multiple Image Processor
		Morphology
			Gray Morphology
		Math
			Add...
			Subtract...
			Multiply...
			Divide...
			Power...
			AND...
			OR...
			XOR...
			Min...
			Max...
			Gamma...
			Set...
			Log...
			Exp...
			Square...
			Square Root...
			Reciprocal...
			NaN Background
			Abs...
			Equation...
		Shadows
			North
			Northeast
			East
			Southeast
			South
			Southwest
			West
			Northwest
			Shadows Demo
	items[3] = 	Image
		Type
			8-bit Color
			RGB Color
			RGB Stack
			HSB Stack
			Change...
		Adjust
			Auto-Contrast
			Brightness/Contrast...
			Window/Level...
			Color Balance...
			Color Threshold...
			Size...
			Canvas Size...
			Line Width... 
			Threshold Colour
			Bleach Correction
			Auto Crop
			Auto Crop (guess background color)
			Auto Threshold
			Auto Local Threshold
			Delete Threshold
			Resize...
			Threshold...
		Properties...
		Color
			Channels Tool...
			Split Channels
			Merge Channels...
			Arrange Channels...
			Show LUT
			Show LUT As Table
			Stack to RGB
			Display LUTs
			Edit LUT...
			Colour Deconvolution
			Average Color
			RGB to CIELAB
			RGB to Luminance
			RGBtoLab 
			RGBtoYUV 
			Dichromacy
			Simulate Color Blindness
			Retinex
			Replace Red with Magenta
			Replace Red with Magenta (system clipboard)
			Spectral Composite...
		Stacks
			Orthogonal Views
			Images to Stack
			Stack to Images
			Make Montage...
			Reslice [/]...
			Z Project...
			3D Project...
			Plot Z-axis Profile
			Label...
			Statistics
			Tools 
				Combine...
				Concatenate...
				Reduce...
				Insert...
				Montage to Stack...
				Make Substack...
				Grouped Z Project...
				Set Label...
				Remove Slice Labels
				Slice Remover
				Slice Keeper
				Stack Sorter
				Stack Splitter
				Interleave
				Deinterleave
			View5D
				start viewer
			Reslice Z
			Time Stamper
			Radial Reslice
			Dynamic Reslice
			Series Labeler
			Kalman Stack Filter
			Reslice...
		Hyperstacks
			New Hyperstack...
			Reduce Dimensionality...
			Re-order Hyperstack ...
		Rename...
		Scale...
		Transform
			Flip Horizontally
			Flip Vertically
			Flip Axis
			Rotate 90 Degrees Right
			Rotate 90 Degrees Left
			Rotate... 
			Image to Results
			Results to Image
			Bin...
			Rotate...
			Translate...
		Zoom
			In
			Out
			Original Scale
			View 100%
			Scale to Fit
			To Selection
			Set...
		Overlay
			From Overlay Manager
			Remove Overlay References
			Remove Overlay
			Flatten
			Properties...
			Labels...
			Add Image
			List Elements
			Overlay Manager
			Overlay Options...
		Lookup Tables
			Invert LUT
			Select...
			Apply LUT
			16_colors
			3-3-2 RGB
			5_ramps
			6_shades
			Blue
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			Cyan Hot
			Fire
			Grays
			Green
			Green Fire Blue
			HiLo
			ICA
			ICA2
			ICA3
			Ice
			Magenta
			Magenta Hot
			Orange Hot
			Rainbow RGB
			Red
			Red Hot
			Red-Green
			Spectrum
			Thermal
			Yellow
			Yellow Hot
			blue_orange_icb
			brgbcmyw
			cool
			edges
			gem
			glasbey
			glow
			phase
			physics
			royal
			sepia
			smart
			thal
			thallium
			unionjack
			NCSA PalEdit
				16_colors
				5_ramps
				6_shades
				blue_orange_icb
				brgbcmyw
				cool
				edges
				gem
				phase
				royal
				sepia
				smart
				thal
				thallium
				unionjack
			WCIF
				Cyan Hot
				Green Fire Blue
				HiLo
				ICA
				ICA2
				ICA3
				Magenta Hot
				Orange Hot
				Rainbow RGB
				Red Hot
				Yellow Hot
		Drawing
			Radial Gradient
			Linear Gradient
		Annotate
			Arrow 
		Video Editing
			New Video
			Open Video
			Add Empty Frame
			Duplicate Frame
			Insert Stack
			Delete Frame
			Make Transition
			Draw Roi
			Move Roi
		Animation
			Start Animation
			Stop Animation
			Stop All Animations
			Animation Options...
		Axes
			Add Axis...
			Axis Position Backward
			Axis Position Forward
			Delete Axis...
			Edit Axes...
			Reorder Axis
			Set Active Axis...
			Set Axis Position...
		Convert
		Convolve
		Crop
		Data
			Add Data...
			Delete Data...
			Reorder Data...
		Duplicate
		Show Info...
		Threshold
			Apply Threshold
			Project
	items[4] = 	Plugins
		Shortcuts
			List Shortcuts...
			Create Shortcut...
			Install Plugin...
			Remove...
		Utilities
			CPU Meter
			Control Panel...
			Close All Without Saving
			Debugging
				Test Marching Cubes
				Test Java3D
			Search...
			Collect Garbage
			Monitor Events...
			Fiji
				New Fiji News
				New Fiji Tutorial
				New Fiji Wiki Screenshot
				Upload Image to Fiji Wiki
				Inspect Java Objects
			Monitor Memory...
			Thread killer
			IJ Robot
			Slide Show
			Repeat a Recent Command
			Make Fiji Package
			Capture Screen
			Capture Image
			ImageJ Properties...
			Threads...
			Reset...
			Benchmark
			Find Commands...
		New 
			Macro
			Macro Tool
			JavaScript
			Plugin
			Plugin Filter
			Plugin Frame
			Plugin Tool
			Text Window...
			Table...
		Compile and Run...
		Install... 
		3D Viewer
		Analyze
			Measure RGB
			View5D 
			Find differences
			Delaunay Voronoi
			VIB Protocol
			2D Histogram
			Visual grep
			Compute Curvatures
			Tubeness
			Surfaceness
			Volume Calculator
		Bio-Formats
			Bio-Formats Importer
			Bio-Formats Exporter
			Bio-Formats Remote Importer
			Bio-Formats Windowless Importer
			Bio-Formats Macro Extensions
			Stack Slicer
			Bio-Formats Plugins Configuration
			Bio-Formats Plugins Shortcut Window
			Update Bio-Formats Plugins
			Help
		Color Inspector 3D
		Example02 CallCommand
		Examples
			Add Popup Split Channels
			CoverMaker
				Cover Maker
				Prepare Cover Maker Database
			Delayed Snapshot
			Delayed Snapshot Window
			Edit LUT As Text
			Extended Profile Plot
			Fiji Cube
			Fiji Logo 3D
			Find Dimension of Raw Image
			Image To Tool Icon
			Multithreaded Image Processing in Javascript
			Spheres and Tubes in 3D
			Single Voxel in 3D
			The Hue Game
			TrakEM2_Example_Scripts
				Homogenize Ball Radius
				Measure AreaLists
				T2 Select All
				T2 set all transforms to identity
				extract stack under arealist
			chess 
			compose rgb-stacks
			downsample 
			list all threads
		Feature Extraction
			Extract SIFT Correspondences
			Extract MOPS Correspondences
			Extract Block Matching Correspondences
			FeatureJ
				FeatureJ Derivatives
				FeatureJ Edges
				FeatureJ Hessian
				FeatureJ Laplacian
				FeatureJ Options
				FeatureJ Panel
				FeatureJ Statistics
				FeatureJ Structure
		Image5D
			New Image5D
			Open Image5D
			Save Image5D
			Open Series As Image5D
			Virtual Image5D Opener
			Hypervolume Opener
			Stack to Image5D
			RGB to Image5D
			Image5D to Stack
			Duplicate
			Set Position
			Set Channel Display
			Set Channel Labels
			Make Montage
			Z Project
			Image5D Stack to RGB
			Transfer Channel Settings
			Image5D Extensions
		Integral Image Filters
			Mean
			Sample Variance
			Standard Deviation
			Remove Outliers
			Normalize Local Contrast
		LOCI
			Please use the 'Bio-Formats' menu item instead
		Landmarks
			Name Landmarks and Register
		Macros
			About Plugin Macros
			Install...
			Bulls Eye
			Run...
			Edit...
			MRI Microtubules Tools
			Polygon 
			Startup Macros...
			RGB Histogram
			Record...
			batch convert any to tif
		OMERO
			Connect to OMERO
		Optic Flow
			Gaussian Window MSE
			Integral Block MSE
			Integral Block PMCC
		Process
			Bilateral Filter
			Implicit Interpolate Binary
			Replace value
			Distance Transform 3D
			Shape-based averaging
			Seam remover
			Show label centers
			Triangle Algorithm
			Mask Of Nearby Points
			Find Connected Regions
			Quantile Based Normalization
			Resample
			Dilate (3D)
			Erode (3D)
			Flood Fill(3D)
			Gradient (3D)
			IFT (3D)
			Laplace (3D)
			Maximum (3D)
			Max (3D)
			Median (3D)
			Minimum (3D)
			Particle Analyzer (3D)
			Rebin (3D)
			Shape-Based Averaging (Experimental)
			Convolve (3D)
			Fast FFT (2D/3D)
			Anisotropic Diffusion 2D
			Frangi Vesselness (imglib, experimental)
			ImgLib Algorithm Launcher
			Show Color Surfaces
			Smooth (3D)
			Extended Depth of Field (Easy mode)...
			Extended Depth of Field (Expert mode)...
			Exact Euclidean Distance Transform (3D)
			Exact Signed Euclidean Distance Transform (3D)
		Registration
			Elastic
				Elastic Stack Alignment
				Elastic Montaging
				Test Block Matching Parameters
			Linear Stack Alignment with SIFT
			Align Image by line ROI
			Rigid Registration
			Moving Least Squares
			StackReg
			Register Virtual Stack Slices
			bUnwarpJ
			TurboReg 
			UnwarpJ
			Descriptor-based registration (2d/3d)
			Manual landmark selection (3d)
			Descriptor-based series registration (2d/3d + t)
		SPIM Registration
			Bead-based registration
			Multi-view fusion
			Multi-view deconvolution
			Utilities
				Apply external transformation
			deprecated
				Registration
				Advanced Registration
				MultiChannel Registration
		Scripting
			Jython Interpreter
			Refresh Jython Scripts
			Macro Interpreter
			Refresh Macros
			Script Editor
			Open Source for Menu Item
			Javascript Interpreter
			Refresh Javascript Scripts
			JRuby Interpreter
			Refresh JRuby Scripts
			Refresh Javas
			Clojure Interpreter
			Refresh Clojure Scripts
			BeanShell Interpreter
			Refresh BSH Scripts
		Scripts
			File
				Make Screencast
		Segmentation
			Level Sets
			Segmentation Editor
			Trainable Weka Segmentation
			deprecated
				Trainable Segmentation
				Advanced Weka Segmentation
			Graph Cut
			Balloon
			Segment blob in 3D Viewer
			SIOX: Simple Interactive Object Extraction
			Apply saved SIOX segmentator
			Blow/Lasso Tool
			Simple Neurite Tracer
			Robust Automatic Threshold Selection
			Statistical Region Merging
			Snakuscule
		Skeleton
			Analyze Skeleton (2D/3D)
			Skeletonize (2D/3D)
		Stacks
			Crop (3D)
			Average Images
		Stitching
			Pairwise stitching
			Grid/Collection stitching
			deprecated
				2D Stitching
				3D Stitching
				Stitch Grid of Images
				Stitch Sequence of Grids of Images
				Stitch Collection of Images
				Stitch Directory with Images (unknown configuration)
				Stitch Multiple Series or Tile Scan File
			MosaicJ
		Tracking
			MTrackJ
			TrackMate
			Load a TrackMate file
			Manual tracking with TrackMate
			ToAST
			Manual Tracking
			MTrack2 
		Transform
			Interactive Rigid
			Interactive Similarity
			Interactive Affine
			Interactive Perspective
			Interactive Moving Least Squares
			Interactive Stack Rotation
			Landmark Correspondences
			TransformJ
				TransformJ Affine
				TransformJ Crop
				TransformJ Embed
				TransformJ Matrix
				TransformJ Mirror
				TransformJ Options
				TransformJ Panel
				TransformJ Rotate
				TransformJ Scale
				TransformJ Translate
				TransformJ Turn
			Transform Virtual Stack Slices
			Spline Deformation Generator
			Distortion Correction
			Panorama equirectangular view
		Volume Viewer
		spiral
			Batch Process Cellomics Mosaics
			Batch Process Cellomics Timeseries Mosaics
			Create Spiral Image
		Debug
			Dump Stack
			Inspect Image
			Inspect Objects
			Invalid Command
			Subscribers
			System Information
			Watch Events
		Run Script...
		Sandbox
			Button Demo
			Dialog Prompt Demo
			Mandelbrot Set
			Measurement Demo
			Mixed World Command
			Multidimensional Test Image
			Parameter Assignment Order
			PointSet Demo
			Statistics Demo
			Table Demo
			TextDisplayTest
	items[5] = 	Edit
		Undo
		Cut
		Copy
		Copy To System
		Paste
		Paste Control...
		Clear
		Clear Outside
		Fill
		Draw
		Invert...
		Selection
			Select View
			Select Overlays
			Deselect Overlays
			Restore Selection
			Fit Spline
			Fit Circle
			Fit Ellipse
			Interpolate
			Convex Hull
			Make Inverse
			Create Selection
			Create Mask
			Properties... 
			Scale... 
			Rotate...
			Enlarge...
			Make Band...
			Straighten...
			To Bounding Box
			Line to Area
			Area to Line
			Image to Selection...
			Fill ROI holes
			Fit Circle to Image
			Select Bounding Box
			Select Bounding Box (guess background color)
			Points from Mask
			Make rectangular selection rounded
			Specify...
		Options
			Line Width...
			Input/Output...
			Fonts...
			Profile Plot Options...
			Rounded Rect Tool...
			Arrow Tool...
			Point Tool...
			Wand Tool...
			Channels...
			Appearance...
			Conversions...
			Memory & Threads...
			Proxy Settings...
			Compiler...
			DICOM...
			Compatibility...
			Misc...
			Reset
			Look and Feel...
	items[6] = 	File
		New
			Image...
			Hyperstack...
			Text Window
			Internal Clipboard
			System Clipboard
			Script
			TrakEM2 (blank)
			TrakEM2 (from template)
			Script...
		Open...
		Open Next
		Open Samples
			AuPbSn 40 (56K)
			Bat Cochlea Volume (19K)
			Bat Cochlea Renderings (449K)
			Blobs (25K)
			Boats (356K)
			Bridge (174K)
			Cardio (768K, RGB DICOM)
			Cell Colony (31K)
			Clown (14K)
			Confocal Series (2.2MB)
			CT (420K, 16-bit DICOM)
			Dot Blot (7K)
			Embryos (42K)
			Fluorescent Cells (400K)
			Fly Brain (1MB)
			Gel (105K)
			HeLa Cells (1.3M, 48-bit RGB)
			Leaf (36K)
			Lena (68K)
			Line Graph (21K)
			Mitosis (26MB, 5D stack)
			MRI Stack (528K)
			M51 Galaxy (177K, 16-bits)
			Neuron (1.6M, 5 channels)
			Nile Bend (1.9M)
			Organ of Corti (2.8M, 4D stack)
			Particles (75K)
			T1 Head (2.4M, 16-bits)
			T1 Head Renderings (736K)
			TEM Filter (112K)
			Tree Rings (48K)
			Cache Sample Images 
			Sintered Alumina (2.6MB)
			Tracks for TrackMate (807K)
			ddaC Neuron (84K)
			Shepp-Logan Phantom (Plugin)
			The New Lenna (95K)
			Malaria Sporozoites (9.2MB)
			First-instar brain (6.3MB)
		Open Recent
			Clear List
		Import
			Image Sequence...
			Raw...
			LUT... 
			Text Image... 
			Text File... 
			Results... 
			Table... 
			URL...
			Stack From List...
			TIFF Virtual Stack...
			AVI...
			XY Coordinates... 
			Bio-Formats
			Bio-Formats (Remote)
			Bio-Formats (Windowless)
			Amira...
			Biorad...
			Leica SP...
			Show Amira Surface
			LSM...
			Analyze...
			Reconstruct Project...
			DF3...
			FIB-SEM ...
			MRC Leginon ...
			PDF ...
			Extract Images From PDF...
			DAT EMMENU ...
			DM3 Reader...
			TorstenRaw GZ Reader...
			Nrrd ...
			ICO...
			Icns...
			SVG...
			LSS16...
			IPLab Reader...
			Animated Gif...
			QuickPALM
				 Open VirtualStack
				 Load Particles (.tif file - fast)
				 Save Particles (.tif file - fast)
			SPIM
			Show LSMToolbox
			TrakEM2 XML...
			Amira as TrakEM2...
			Vaa3d...
			Open [Image IO]
			Open with preview ...
		Close
		Close All
		Save As
			Tiff...
			Gif...
			Jpeg...
			Text Image...
			ZIP...
			Raw Data...
			Image Sequence... 
			AVI... 
			BMP...
			PNG...
			PGM...
			FITS...
			LUT...
			Selection...
			XY Coordinates...
			Results...
			Text...
			AmiraMesh ...
			AmiraTable ...
			Biorad ...
			Wavefront .OBJ ...
			Leica SP ...
			Analyze... 
			DF3 ...
			Nrrd ... 
			ICO ...
			Icns ...
			XPM ...
			LSS16 ...
			PDF ... 
			Animated Gif ... 
			EPS ...
			PNG ...
			PNM ...
			Compressed TIFF ...
		Revert
		Save
		Save As...
		Preferences
		Page Setup...
		Print...
		Quit
	items[7] = 	Analyze
		Histogram Plot
		Measure
		Analyze Particles...
		Summarize
		Distribution...
		Label
		Clear Results
		Set Measurements...
		Set Scale...
		Calibrate...
		Histogram
		Plot Profile
		Surface Plot...
		Gels
			Select First Lane
			Select Next Lane
			Plot Lanes
			Re-plot Lanes
			Reset
			Label Peaks
			Gel Analyzer Options...
		Tools
			Save XY Coordinates...
			Fractal Box Count...
			Analyze Line Graph
			Curve Fitting...
			Scale Bar...
			Calibration Bar...
			PointPicker
			Sync Windows
			Sync Measure 3D
			Synchronize Windows
		TopoJ
			Compute Topography
			Remove Slope
		Optic Flow
			FlowJ
			PIV analysis
		Helmholtz Analysis
		Color Histogram
		Sholl Analysis...
		Local Thickness
			Local Thickness (complete process)
			Geometry to Distance Map
			Distance Map to Distance Ridge
			Distance Ridge to Local Thickness
			Local Thickness to Cleaned-Up Local Thickness
		QuickPALM
			Analyse Particles
			Stop Analyse Particles (kills the threads)
			Reconstruct Dataset
			Create 3D calibration (requires astigmatism)
			Correct Particles Drift (based on ROI)
			Fast VirtualStack Opener
			Load Particles (.tif file - fast)
			Save Particles (.tif file - fast)
			Sort Particles by frame (in a .tif particle table file)
			Update QuickPALM
			About...
		Classification
			IsoData Classifier
		Shape Index Map
		3D Surface Plot
		Directionality
		Colocalization
			Colocalization Threshold
			Colocalization Test
			Coloc 2
		3D Objects Counter
		3D OC Options,null,null), called from non-EDT Thread:null
[DEBUG] Created service 'net.imagej.legacy.DefaultLegacyService' in 552 ms
[DEBUG] Creating service: org.scijava.plugins.scripting.java.DefaultJavaService
[DEBUG] Created service 'org.scijava.plugins.scripting.java.DefaultJavaService' in 1 ms
[DEBUG] Creating service: org.scijava.ui.swing.SwingIconService
[DEBUG] Created service 'org.scijava.ui.swing.SwingIconService' in 1 ms
[DEBUG] Creating service: net.imagej.ui.awt.AWTScreenCaptureService
[DEBUG] Created service 'net.imagej.ui.awt.AWTScreenCaptureService' in 1 ms
[DEBUG] Creating service: net.imagej.ops.DefaultOpMatchingService
[DEBUG] Created service 'net.imagej.ops.DefaultOpMatchingService' in 1 ms
[DEBUG] Creating service: net.imagej.ops.DefaultOpService
[DEBUG] Created service 'net.imagej.ops.DefaultOpService' in 1 ms
[DEBUG] Creating service: net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor
[DEBUG] Created service 'net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor' in 0 ms
[DEBUG] Creating service: net.imagej.ui.swing.overlay.JHotDrawService
[DEBUG] Created service 'net.imagej.ui.swing.overlay.JHotDrawService' in 1 ms
[DEBUG] Creating service: fiji.DefaultFijiService
[DEBUG] Created service 'fiji.DefaultFijiService' in 1 ms
[DEBUG] Creating service: io.scif.codec.DefaultCodecService
[DEBUG] Created service 'io.scif.codec.DefaultCodecService' in 0 ms
[DEBUG] Creating service: io.scif.DefaultMetadataService
[DEBUG] Created service 'io.scif.DefaultMetadataService' in 1 ms
[DEBUG] Creating service: io.scif.formats.qt.DefaultQTJavaService
[DEBUG] Created service 'io.scif.formats.qt.DefaultQTJavaService' in 1 ms
[DEBUG] Creating service: io.scif.formats.tiff.DefaultTiffService
[DEBUG] Created service 'io.scif.formats.tiff.DefaultTiffService' in 1 ms
[DEBUG] Creating service: io.scif.gui.DefaultGUIService
[DEBUG] Created service 'io.scif.gui.DefaultGUIService' in 1 ms
[DEBUG] Creating service: io.scif.img.cell.cache.MapDBCache
[DEBUG] Creating service: io.scif.refs.DefaultRefManagerService
[DEBUG] Created service 'io.scif.refs.DefaultRefManagerService' in 0 ms
[DEBUG] Created service 'io.scif.img.cell.cache.MapDBCache' in 4 ms
[DEBUG] Creating service: io.scif.img.converters.DefaultPlaneConverterService
[DEBUG] Created service 'io.scif.img.converters.DefaultPlaneConverterService' in 1 ms
[DEBUG] Creating service: io.scif.img.DefaultImgUtilityService
[DEBUG] Created service 'io.scif.img.DefaultImgUtilityService' in 3 ms
[DEBUG] Creating service: io.scif.io.DefaultNIOService
[DEBUG] Created service 'io.scif.io.DefaultNIOService' in 1 ms
[DEBUG] Creating service: io.scif.services.DefaultFilePatternService
[DEBUG] Created service 'io.scif.services.DefaultFilePatternService' in 1 ms
[DEBUG] Creating service: io.scif.services.DefaultLocationService
[DEBUG] Created service 'io.scif.services.DefaultLocationService' in 1 ms
[DEBUG] Creating service: io.scif.services.DefaultTranslatorService
[DEBUG] Created service 'io.scif.services.DefaultTranslatorService' in 0 ms
[DEBUG] Creating service: io.scif.services.JAIIIOServiceImpl
[DEBUG] Created service 'io.scif.services.JAIIIOServiceImpl' in 5 ms
[DEBUG] Creating service: io.scif.xml.DefaultXMLService
[DEBUG] Created service 'io.scif.xml.DefaultXMLService' in 9 ms
[DEBUG] Creating service: io.scif.ome.services.DefaultOMEMetadataService
[DEBUG] Creating service: io.scif.ome.services.DefaultOMEXMLService
[DEBUG] Created service 'io.scif.ome.services.DefaultOMEXMLService' in 13 ms
[DEBUG] Created service 'io.scif.ome.services.DefaultOMEMetadataService' in 18 ms
[DEBUG] Creating service: net.imagej.updater.DefaultUploaderService
[DEBUG] Created service 'net.imagej.updater.DefaultUploaderService' in 2 ms
[DEBUG] Creating service: net.imagej.updater.DefaultUpdateService
[DEBUG] Created service 'net.imagej.updater.DefaultUpdateService' in 1 ms
[DEBUG] Creating service: net.imagej.render.DummyRenderingService
[DEBUG] Created service 'net.imagej.render.DummyRenderingService' in 0 ms
[DEBUG] Creating service: net.imagej.display.DummyScreenCaptureService
[DEBUG] Created service 'net.imagej.display.DummyScreenCaptureService' in 0 ms
[DEBUG] Creating service: io.scif.services.DefaultInitializeService
[DEBUG] Created service 'io.scif.services.DefaultInitializeService' in 1 ms
[DEBUG] publish(
	context = org.scijava.Context@620645fd
	consumed = false,null,null), called from non-EDT Thread:null
java.lang.NoSuchMethodError: org.apache.xpath.XPathContext.<init>(Z)V
	at org.apache.xpath.jaxp.XPathImpl.eval(XPathImpl.java:207)
	at org.apache.xpath.jaxp.XPathImpl.evaluate(XPathImpl.java:281)
	at org.scijava.util.XML.xpath(XML.java:142)
	at org.scijava.util.XML.cdata(XML.java:133)
	at net.imagej.util.MediaWikiClient.getPageSource(MediaWikiClient.java:83)
	at net.imagej.updater.util.AvailableSites.getAvailableSites(AvailableSites.java:64)
	at net.imagej.updater.util.AvailableSites.initializeSites(AvailableSites.java:136)
	at net.imagej.updater.util.AvailableSites.initializeAndAddSites(AvailableSites.java:185)
	at net.imagej.ui.swing.updater.ImageJUpdater.run(ImageJUpdater.java:101)
	at fiji.updater.IJ2Updater.run(IJ2Updater.java:63)
	at fiji.updater.Updater.run(Updater.java:30)
	at ij.IJ.runUserPlugIn(IJ.java:201)
	at ij.IJ.runPlugIn(IJ.java:165)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)
java.lang.ClassNotFoundException: imagej.updater.gui.ImageJUpdater
	at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
	at fiji.updater.Updater.run(Updater.java:35)
	at ij.IJ.runUserPlugIn(IJ.java:201)
	at ij.IJ.runPlugIn(IJ.java:165)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)
Falling back to remote updater at http://update.imagej.net/bootstrap.js
java.lang.NoSuchMethodError: org.apache.xpath.XPathContext.<init>(Z)V
	at org.apache.xpath.jaxp.XPathImpl.eval(XPathImpl.java:207)
	at org.apache.xpath.jaxp.XPathImpl.evaluate(XPathImpl.java:281)
	at org.scijava.util.XML.xpath(XML.java:142)
	at org.scijava.util.XML.cdata(XML.java:133)
	at net.imagej.util.MediaWikiClient.getPageSource(MediaWikiClient.java:83)
	at net.imagej.updater.util.AvailableSites.getAvailableSites(AvailableSites.java:64)
	at net.imagej.updater.util.AvailableSites.initializeSites(AvailableSites.java:136)
	at net.imagej.updater.util.AvailableSites.initializeAndAddSites(AvailableSites.java:185)
	at net.imagej.ui.swing.updater.ImageJUpdater.run(ImageJUpdater.java:101)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at sun.reflect.misc.Trampoline.invoke(MethodUtil.java:37)
	at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at sun.reflect.misc.MethodUtil.invoke(MethodUtil.java:244)
	at sun.org.mozilla.javascript.internal.MemberBox.invoke(MemberBox.java:132)
	at sun.org.mozilla.javascript.internal.NativeJavaMethod.call(NativeJavaMethod.java:190)
	at sun.org.mozilla.javascript.internal.Interpreter.interpretLoop(Interpreter.java:3073)
	at sun.org.mozilla.javascript.internal.Interpreter.interpret(Interpreter.java:2239)
	at sun.org.mozilla.javascript.internal.InterpretedFunction.call(InterpretedFunction.java:138)
	at sun.org.mozilla.javascript.internal.ContextFactory.doTopCall(ContextFactory.java:323)
	at sun.org.mozilla.javascript.internal.ScriptRuntime.doTopCall(ScriptRuntime.java:2747)
	at sun.org.mozilla.javascript.internal.InterpretedFunction.exec(InterpretedFunction.java:149)
	at sun.org.mozilla.javascript.internal.Context.evaluateReader(Context.java:1169)
	at com.sun.script.javascript.RhinoScriptEngine.eval(RhinoScriptEngine.java:106)
	at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:232)
	at fiji.updater.Updater.runRemote(Updater.java:83)
	at fiji.updater.Updater.run(Updater.java:41)
	at ij.IJ.runUserPlugIn(IJ.java:201)
	at ij.IJ.runPlugIn(IJ.java:165)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)

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