can I combine ROIs from different slices?

[WangPing]

Hello, I have a 3D image, and I drew ROIs that covers multiple slices. Now I wanted to treat them as a single ROI (like a volume of interest) , how could I combine them?

From the ROI manager, I chose More->OR(combine) but which does not seem to do the thing I wanted.

I hope someone could shred some light on how I could solve the problem.


Thanks

ping

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Krs5]

Dear Ping,

This sounds more a job for the 3D ROI Manager part of the 3D ImageJ Suite, see http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_ij_suite:start

Best wishes

Kees


Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
www.le.ac.uk/advanced-imaging-facility


-----Original Message-----
From: Wang Ping [mailto:[hidden email]]
Sent: 25 July 2018 23:08
To: [hidden email]
Subject: can I combine ROIs from different slices?

Hello, I have a 3D image, and I drew ROIs that covers multiple slices. Now I wanted to treat them as a single ROI (like a volume of interest) , how could I combine them?

From the ROI manager, I chose More->OR(combine) but which does not seem to do the thing I wanted.

I hope someone could shred some light on how I could solve the problem.


Thanks

ping

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[WangPing]

Thanks Kees, I will try this!


________________________________
发件人: ImageJ Interest Group <[hidden email]> 代表 Straatman, Kees (Dr.) <[hidden email]>
发送时间: 2018年7月26日 15:40
收件人: [hidden email]
主题: Re: can I combine ROIs from different slices?

Dear Ping,

This sounds more a job for the 3D ROI Manager part of the 3D ImageJ Suite, see http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_ij_suite:start
3D ImageJ Suite [ImageJ Documentation Wiki]<http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_ij_suite:start>
imagejdocu.tudor.lu
Download and copy the following jars in your plugins folder or alternatively download the 3D suite bundle and unzip it in your plugins folder. The various plugins will appear in the menu 3D of the plugins list.




Best wishes

Kees


Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
www.le.ac.uk/advanced-imaging-facility<http://www.le.ac.uk/advanced-imaging-facility>


-----Original Message-----
From: Wang Ping [mailto:[hidden email]]
Sent: 25 July 2018 23:08
To: [hidden email]
Subject: can I combine ROIs from different slices?

Hello, I have a 3D image, and I drew ROIs that covers multiple slices. Now I wanted to treat them as a single ROI (like a volume of interest) , how could I combine them?

From the ROI manager, I chose More->OR(combine) but which does not seem to do the thing I wanted.

I hope someone could shred some light on how I could solve the problem.


Thanks

ping

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html