Hi,
Just for those that may run into this problem in the future...
The problem seems to arise when I use the installed java version on
Linux i.e.
java -cp ij.jar:plugins/TomoJ/TomoJ_2.0.jar...
When I use the imagej java all is well (from within the ImageJ dir).....
./jre/bin/java -cp ij.jar:TomoJ_2.0.jar ..... TomoJ_ [ Nonormalisation
Settiltaxis 90.0 center 131.5 128.5 settiltanglesregular 0.0 1.0 sirt 30
0.5 256 1 ] finalData.tif
enter macro mode
set the center to (131.5, 128.5)
temporary files are saved processed/
...
iteration #1
number of cpu used 8
SIRT 2 : 99% remaining 707 ms total :1 min 24 s
dissimilarity average : 0.0034170610108535332
minimum : 0.0 (image 90.0)
Also I have problems in teh above if I don't leave a space in the square
brackets...
[No.... ....1] is bad,
[ No.... ....1 ] seems fine.
I hope this helps someone in the future :-)
Cheers,
Wes.
On Thu, 2010-08-05 at 15:56 +0100, Wes wrote:
> Hi,
>
> I am having problems running TomoJ from the command line on a linux
> machine.
>
> Currently I am using....
>
> java -cp
> ij.jar:plugins/TomoJ/TomoJ_2.0.jar:plugins/TomoJ/parallelcolt-0.9.4.jar
> TomoJ_ -tiltaxis 90 -tilt 0 1.0 -SIRT 30 0.5 256 0 finalData.tif
>
> All I get back is "enter macro mode"
>
> Has anybody seen this error before?
>
> Cheers,
>
> Wes.
>
>
>
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