error w/bio-format

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error w/bio-format

Richard Cole
I am trying to open a large Leica file (~3.3 gigs) and getting an error,
works great w/small files.  Has anyone else experienced that>

Cheers
RWC





Richard Cole
Research Scientist IV
Director: Advanced Light Microscopy Core Unit
Wadsworth Center
P.O. Box 509 Albany N.Y. 12201-0509
518-474-7048 Phone
518-457-7893 Fax

Email [hidden email]
Website www.wadsworth.org/cores/alm/index.htm



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Re: error w/bio-format

ctrueden
Richard,

Are you running ImageJ on a 64-bit system with lots of RAM allocated?
If not, 3.3 GB is far too large to open the entire file. You can work
around the problem by choosing only certain image series within the
file, or selecting only a subset of the planes (by checking "Specify
range for each series"), or choosing to display the data with the 4D
Data Browser rather than a standard ImageJ window (since the Data
Browser does on-demand virtualization/caching).

If none of those options work, or you are receiving an exception of
some sort, more details would be useful to identify and fix the
problem. Ideally, it would be good to have the file, but I know 3.3 GB
is a lot to upload anywhere, so if you could at least send the text or
screenshot of the error message, it would be very helpful.

Thanks,
Curtis

On 4/13/07, Richard Cole <[hidden email]> wrote:

> I am trying to open a large Leica file (~3.3 gigs) and getting an error,
> works great w/small files.  Has anyone else experienced that>
>
> Cheers
> RWC
>
>
>
>
>
> Richard Cole
> Research Scientist IV
> Director: Advanced Light Microscopy Core Unit
> Wadsworth Center
> P.O. Box 509 Albany N.Y. 12201-0509
> 518-474-7048 Phone
> 518-457-7893 Fax
>
> Email [hidden email]
> Website www.wadsworth.org/cores/alm/index.htm
>
>
>
>