ij-plugins_toolkit v.1.9.0 some plugins do not work.

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ij-plugins_toolkit v.1.9.0 some plugins do not work.

Gabriel Landini
I am trying to run the Coherence Enhancing Diffusion plugin by Jarek Sacha in
plain ImageJ under linux (tried in openjdk 1.7 and Oracle 1.8) from:

http://sourceforge.net/projects/ij-plugins/files/ij-plugins_toolkit/v.1.9.0/

I get an error for some plugins:

Plugin or class not found:
"sf.ij_plugins.filters.CoherenceEnhancingDiffusionPlugin"
(java.lang.ClassNotFoundException:
sf.ij_plugins.filters.CoherenceEnhancingDiffusionsPlugin)

The Perona-Malik Anisotropic Diffusion is another one that does not work, but
the k-means Clustering in the same jar file works fine.
They all appear in the menu and also listed wtih Ctrl-L (command finder).

Any ideas what it might be?

Cheers

Gabriel

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Re: ij-plugins_toolkit v.1.9.0 some plugins do not work.

Jarek Sacha-3
On 11/26/2014 5:23 AM, Gabriel Landini wrote:

> I am trying to run the Coherence Enhancing Diffusion plugin by Jarek Sacha in
> plain ImageJ under linux (tried in openjdk 1.7 and Oracle 1.8) from:
>
> http://sourceforge.net/projects/ij-plugins/files/ij-plugins_toolkit/v.1.9.0/
>
> I get an error for some plugins:
>
> Plugin or class not found:
> "sf.ij_plugins.filters.CoherenceEnhancingDiffusionPlugin"
> (java.lang.ClassNotFoundException:
> sf.ij_plugins.filters.CoherenceEnhancingDiffusionsPlugin)
Looks that there is some issue in 1.9.0 with loading dependent classes
from the plugin jar. The plugin itself is there but something that it
needs is not. I will checking this and release update (1.9.1) soon.

On the other hand, the I do have new implementation of  Coherence
Enhancing Diffusion that is more accurate and faster than 1.9.0 version.
About 7 times faster on a quad-core. It will use multiple cores to speed
up computations. It is part of version 2.0.0. Implementation is ready,
but I need to double check packaging, so there is no issues like with
1.9.0. I will keep you posted.

Jarek

>
> The Perona-Malik Anisotropic Diffusion is another one that does not work, but
> the k-means Clustering in the same jar file works fine.
> They all appear in the menu and also listed wtih Ctrl-L (command finder).
>
> Any ideas what it might be?
>
> Cheers
>
> Gabriel
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>

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Re: ij-plugins_toolkit v.1.9.0 some plugins do not work.

Jarek Sacha-3
On 11/27/2014 11:03 AM, Jarek Sacha wrote:
> Looks that there is some issue in 1.9.0 with loading dependent classes
> from the plugin jar. The plugin itself is there but something that it
> needs is not. I will checking this and release update (1.9.1) soon.
Version 1.9.1 with fixed packaging is now posted at:
https://sourceforge.net/projects/ij-plugins/files/ij-plugins_toolkit/v.1.9.1/

Let me know how it works.

> On the other hand, the I do have new implementation of  Coherence
> Enhancing Diffusion that is more accurate and faster than 1.9.0
> version. About 7 times faster on a quad-core. It will use multiple
> cores to speed up computations. It is part of version 2.0.0.
> Implementation is ready, but I need to double check packaging, so
> there is no issues like with 1.9.0. I will keep you posted.
As for new Coherence Enhancing Diffusion and v.2. Future releases of
ij-plugins_toolkit will have 2 parallel releases. v.1 will maintain
existing plugins. v.2 will contain new and improved ones, both can be
installed at the same time. The improved plugins will move from v.1 to
v.2, so for instance Coherence Enhancing Diffusion will be removed from
v.1.10.0 and moved and improved in v.2.0.0. v.2 will also be split in
smaller plugins set, for instance "color" will be in its own project and
released with independent timing from the rest. The split will simplify
maintenance for me.

Jarek

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Re: ij-plugins_toolkit v.1.9.0 some plugins do not work.

Gabriel Landini
On Thursday 27 Nov 2014 13:21:03 Jarek Sacha wrote:

> On 11/27/2014 11:03 AM, Jarek Sacha wrote:
> > Looks that there is some issue in 1.9.0 with loading dependent classes
> > from the plugin jar. The plugin itself is there but something that it
> > needs is not. I will checking this and release update (1.9.1) soon.
>
> Version 1.9.1 with fixed packaging is now posted at:
> https://sourceforge.net/projects/ij-plugins/files/ij-plugins_toolkit/v.1.9.1
> /
>
> Let me know how it works.

Hi Jarek, It works perfect. Many thanks for resolving this so quickly.

Best wishes

Gabriel

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