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I am wondering what open source software people on this list are using
to acquire time lapse images under linux. At present, I only require camera control, and my camera is a Point Grey chameleon (USB 2.0), which should work under libdc1394/libusb. The obvious choice is micromanager, but I have been unable to get it to work properly under Suse linux. I am trying to resolve that via the micromanager list. While I continue to bang my head against that wall, I thought that maybe someone on this list has a solution, since I do not need all of the capabilities of micromanager. Thanks in advance --aryeh -- Aryeh Weiss Faculty of Engineering Bar Ilan University Ramat Gan 52900 Israel Ph: 972-3-5317638 FAX: 972-3-7384051 -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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On Monday 08 Jul 2013 04:52:42 Aryeh Weiss wrote:
> I am wondering what open source software people on this list are using > to acquire time lapse images under linux. At present, I only require > camera control, and my camera is a Point Grey chameleon (USB 2.0), > which should work under libdc1394/libusb. > > The obvious choice is micromanager, but I have been unable to get it to > work properly under Suse linux. I am trying to resolve that via the > micromanager list. > > While I continue to bang my head against that wall, I thought that maybe > someone on this list has a solution, since I do not need all of the > capabilities of micromanager. Have you tried the Isight plugin? That is the only one I have been able to make work with a number of usb webcams. -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Aryeh Weiss
...oops I sent before pasting the link.
http://fun.bio.keio.ac.jp/~funa/ij/ It works very well under opensuse 12.3 (64bit). Regards Gabriel -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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On 7/8/13 11:46 AM, Gabriel Landini wrote:
> ...oops I sent before pasting the link. > > http://fun.bio.keio.ac.jp/~funa/ij/ > > It works very well under opensuse 12.3 (64bit). > Thank you for this suggestion. I tried it, and it installs and runs with no problem. Unfortunately, it does not recognize my camera. Then again, libdc1394+libusb doesn't find my camera either. However, lsusb ( utility that lists all connected USB devices) finds it, and lists all sorts of USB data for it. Point Grey says that their USB cameras are IIDC 1394 compliant, so I am stumped as to why I cannot get this camera work. Maybe Point Grey will have the solution. Best regards --aryeh -- Aryeh Weiss Faculty of Engineering Bar Ilan University Ramat Gan 52900 Israel Ph: 972-3-5317638 FAX: 972-3-7384051 -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hello All,
When I open a folder as a stack by drag and drop the files open in the correct order. Also when I go file>image sequence> and select a random image from the folder I get the same behaviour. However whan I use the macro command: dir = getDirectory("Choose directory"); run("Image Sequence...", "open=&dir starting=1 increment=1 scale=100"); or file = File.openDialog("Choose a file"); run("Image Sequence...", "open=&file starting=1 increment=1 scale=100"); ....my stack gets scrambled. I'm sure I'm missing something simple here but maybe there is a better approach. My file naming is a bit odd and I could relabel them all first but I have lots of images. Also the Stack Sorter command "Sort by Label" works on the scrambled stack but it is not recordable. File name exmaple: B16_F1_28_A_rec0000.modif.tif.0004.tif B16_F1_28_A_rec0000.modif.tif.0005.tif Hope someone can help Best R -- Dr Richard Mort MRC Human Genetics Unit MRC IGMM University of Edinburgh Western General Hospital Crewe Road Edinburgh. EH4 2XU, UK Tel: +44 (0)131 332 2471 Fax: +44 (0)131 467 8456 -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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In reply to this post by Aryeh Weiss
According to Point Grey, their latest FlyCapture SDK, which includes a GUI capture program, works with their USB cameras under Linux: "With the release of version 2.0 of the FlyCapture SDK, users can program and operate Point Grey FireWire and USB imaging cameras in a Linux environment." (Knowledgebase Article 17: http://www.ptgrey.com/support/kb/index.asp?a=4&q=17&ST=usb+linux). They then refer to a Technical Application Note under Article 330: Getting Started with FlyCapture 2.0 and Linux.
In Article 17, they also describe steps to take for getting libdc1394 Support for USB Cameras to work. There is a very nice program to acquire from IIDC/DCAM firewire programs under Linux called Coriander (http://damien.douxchamps.net/ieee1394/coriander/) which has worked for us in the past with a PointGrey Grasshopper camera (Firewire). As far as I understand, Coriander is based on libdc1394, but whether this is enough to make it work with your USB camera is above my paygrade. Cheers, Richard -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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