jai_imageio in scifio and dcm4chee - conflict

[Ilan]

I am trying to run dcm4chee inside Fiji and have run into a conflict with scifio. I succeeded to run dcm4chee inside ImageJ with no scifio, and moving the code to Fiji gave me a conflict.
The problem is jai_imageio which claims to be version 5.1, but is probably version 1.1 which is well known.
dcm4chee uses  jai_imageio-1.2-pre-dr-b04 which is larger than the scifio version, 1.1MB compared to 1.0MB.

I tried using the scifio 5.1 version, but it failed, most likely because it is missing the extra 0.1MB of code.
Would it be possible to test if scifio works using the dcm4chee expanded version of jai_imageio?
That would allow both dcm4chee and scifio to run together.

Thanks,
Ilan

[ctrueden]

Hi Ilan,

> I am trying to run dcm4chee inside Fiji and have run into a conflict
> with scifio.

I doubt this is a problem with SCIFIO. The scifio-jai-imageio-1.1.0.jar is
a _shadowed_ version of the JAI ImageIO library, and thus will not conflict
with the regular version.

> moving the code to Fiji gave me a conflict.

Please post the specific error message.

> dcm4chee uses  jai_imageio-1.2-pre-dr-b04 which is larger than the
> scifio version, 1.1MB compared to 1.0MB.

Like I said, these two JAR files should not conflict, and their relative
sizes do not matter in any case. What matters is the Java classes inside
each.

This is a very technical issue, so if you need further assistance, please
post on the ImageJ Forum (http://forum.imagej.net/) in the Development
category.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Wed, May 25, 2016 at 5:48 AM, Ilan <[hidden email]> wrote:

> I am trying to run dcm4chee inside Fiji and have run into a conflict with
> scifio. I succeeded to run dcm4chee inside ImageJ with no scifio, and
> moving
> the code to Fiji gave me a conflict.
> The problem is jai_imageio which claims to be version 5.1, but is probably
> version 1.1 which is well known.
> dcm4chee uses  jai_imageio-1.2-pre-dr-b04 which is larger than the scifio
> version, 1.1MB compared to 1.0MB.
>
> I tried using the scifio 5.1 version, but it failed, most likely because it
> is missing the extra 0.1MB of code.
> Would it be possible to test if scifio works using the dcm4chee expanded
> version of jai_imageio?
> That would allow both dcm4chee and scifio to run together.
>
> Thanks,
> Ilan
>
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/jai-imageio-in-scifio-and-dcm4chee-conflict-tp5016519.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ctrueden]

See also this thread on the ImageJ forum:
http://forum.imagej.net/t/1936


On Thu, Jun 16, 2016 at 1:32 PM, Curtis Rueden <[hidden email]> wrote:

> Hi Ilan,
>
> > I am trying to run dcm4chee inside Fiji and have run into a conflict
> > with scifio.
>
> I doubt this is a problem with SCIFIO. The scifio-jai-imageio-1.1.0.jar is
> a _shadowed_ version of the JAI ImageIO library, and thus will not conflict
> with the regular version.
>
> > moving the code to Fiji gave me a conflict.
>
> Please post the specific error message.
>
> > dcm4chee uses  jai_imageio-1.2-pre-dr-b04 which is larger than the
> > scifio version, 1.1MB compared to 1.0MB.
>
> Like I said, these two JAR files should not conflict, and their relative
> sizes do not matter in any case. What matters is the Java classes inside
> each.
>
> This is a very technical issue, so if you need further assistance, please
> post on the ImageJ Forum (http://forum.imagej.net/) in the Development
> category.
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Wed, May 25, 2016 at 5:48 AM, Ilan <[hidden email]> wrote:
>
>> I am trying to run dcm4chee inside Fiji and have run into a conflict with
>> scifio. I succeeded to run dcm4chee inside ImageJ with no scifio, and
>> moving
>> the code to Fiji gave me a conflict.
>> The problem is jai_imageio which claims to be version 5.1, but is probably
>> version 1.1 which is well known.
>> dcm4chee uses  jai_imageio-1.2-pre-dr-b04 which is larger than the scifio
>> version, 1.1MB compared to 1.0MB.
>>
>> I tried using the scifio 5.1 version, but it failed, most likely because
>> it
>> is missing the extra 0.1MB of code.
>> Would it be possible to test if scifio works using the dcm4chee expanded
>> version of jai_imageio?
>> That would allow both dcm4chee and scifio to run together.
>>
>> Thanks,
>> Ilan
>>
>>
>>
>>
>> --
>> View this message in context:
>> http://imagej.1557.x6.nabble.com/jai-imageio-in-scifio-and-dcm4chee-conflict-tp5016519.html
>> Sent from the ImageJ mailing list archive at Nabble.com.
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html