Dear Pedro,
Maybe the code below does what you want
setBatchMode(true);
title = getTitle();
getDimensions(width, height, channels, slices, frames);
for (x=0; x<width; x++){
selectWindow(title);
makeLine(x, 0, x, height);
run("Plot Z-axis Profile");
if (x==0){
PlotTitle = getTitle();
}
else{
Pl= getTitle();
selectWindow(PlotTitle);
Plot.addFromPlot(Pl, 0);
Plot.setStyle(x, "black,none,1.0,Line");
selectWindow(Pl);
run("Close");
}
Plot.setLimitsToFit();
}
setBatchMode(false);
Best wishes
Kees
Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
www.le.ac.uk/advanced-imaging-facility
ImageJ workshops 15 and 16 July:
https://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/AIF/workshops/imagej-workshops-July-2019
-----Original Message-----
From: PJP <
[hidden email]>
Sent: 13 June 2019 18:47
To:
[hidden email]
Subject: kymograph to multiple Z profiles
Hi there,
I have a kymograph file and would like to get the z profiles of all the rows. I know that this can be done by drawing a line, that can be moved subsequently line-by-line, but this is too tedious (imagine 250 rows). Is there any way to do it straightforward, i.e., get all the z profiles simultaneously?
thanks!
Pedro
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