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oib reader

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aparna sadananda
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oib reader

aparna sadananda
Hi all,
I wish to open files of the oib format using Image J. For this, I downloaded
the Bioformats reader and installed the zipped file in the Plugins folder of
Image J files. To open the oib format file, I click on the plugins menu,
then the Loci tab followed by Bioformats importer. Then I browse for the oib
file and click open. On doing this, I get a window titled "Exception".
Can anyone tell me, where I am wrong and how I can get Bioformats reader to
read my oib files?

Thanks in Advance,
Aparna.
Melissa Linkert
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Re: oib reader

Melissa Linkert
Hi Aparna,
I'm sorry to hear that Bio-Formats is not working correctly for you.  We
(the Bio-Formats developers) would be happy to fix this, but we need a
little more information first.

First of all, are you using the latest release of Bio-Formats (dated 17
April, 2008)?  If not, please upgrade to the latest version and see if the
problem is fixed.  To check the version, select "About>Plugins>LOCI Plugins"
in ImageJ.

If you are using the latest version of Bio-Formats, please supply the
following information:

1) the operating system that you are using
2) the version of Java that you are using
3) the version of ImageJ that you are using
4) the exact contents of the "Exception" window - either a screenshot, or
copy-and-pasted text
5) if possible, an OIB file that produces this problem (I will send details
in a private email)

Regards,
-Melissa

On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
[hidden email]> wrote:

> Hi all,
> I wish to open files of the oib format using Image J. For this, I
> downloaded
> the Bioformats reader and installed the zipped file in the Plugins folder
> of
> Image J files. To open the oib format file, I click on the plugins menu,
> then the Loci tab followed by Bioformats importer. Then I browse for the
> oib
> file and click open. On doing this, I get a window titled "Exception".
> Can anyone tell me, where I am wrong and how I can get Bioformats reader to
> read my oib files?
>
> Thanks in Advance,
> Aparna.
>
aparna sadananda
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Re: oib reader

aparna sadananda
Hi Melissa!
I am furnishing the details you had asked for:
1)  OS- Windows Vista Home Basic
2)  Java Plugin 1.1
3)  Image J version- 1.37v.
The contents of the exception window that I get while opening an oib file
are:
java.util.NoSuchElementException
 at java.util.StringTokenizer.nextToken(Unknown Source)
 at loci.formats.POITools.setupFile(POITools.java:197)
 at loci.formats.POITools.getFileSize(POITools.java:114)
 at loci.formats.POITools.getDocumentStream(POITools.java:89)
 at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
 at loci.formats.FormatReader.setId(FormatReader.java:633)
 at loci.formats.FormatHandler.setId(FormatHandler.java:134)
 at loci.plugins.Importer.run(Importer.java:145)
 at loci.plugins.LociImporter.run(LociImporter.java:74)
 at ij.IJ.runUserPlugIn(IJ.java:266)
 at ij.IJ.runPlugIn(IJ.java:120)
 at ij.Executer.runCommand(Executer.java:95)
 at ij.Executer.run(Executer.java:49)
 at java.lang.Thread.run(Unknown Source)

I will send the 13.2 mb oib file in a separate mail.
Regards,
Aparna




On Sat, May 24, 2008 at 6:40 PM, Melissa Linkert <[hidden email]> wrote:

> Hi Aparna,
> I'm sorry to hear that Bio-Formats is not working correctly for you.  We
> (the Bio-Formats developers) would be happy to fix this, but we need a
> little more information first.
>
> First of all, are you using the latest release of Bio-Formats (dated 17
> April, 2008)?  If not, please upgrade to the latest version and see if the
> problem is fixed.  To check the version, select "About>Plugins>LOCI
> Plugins"
> in ImageJ.
>
> If you are using the latest version of Bio-Formats, please supply the
> following information:
>
> 1) the operating system that you are using
> 2) the version of Java that you are using
> 3) the version of ImageJ that you are using
> 4) the exact contents of the "Exception" window - either a screenshot, or
> copy-and-pasted text
> 5) if possible, an OIB file that produces this problem (I will send details
> in a private email)
>
> Regards,
> -Melissa
>
> On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
> [hidden email]> wrote:
>
> > Hi all,
> > I wish to open files of the oib format using Image J. For this, I
> > downloaded
> > the Bioformats reader and installed the zipped file in the Plugins folder
> > of
> > Image J files. To open the oib format file, I click on the plugins menu,
> > then the Loci tab followed by Bioformats importer. Then I browse for the
> > oib
> > file and click open. On doing this, I get a window titled "Exception".
> > Can anyone tell me, where I am wrong and how I can get Bioformats reader
> to
> > read my oib files?
> >
> > Thanks in Advance,
> > Aparna.
> >
>
Fong Koh
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Re: oib reader

Fong Koh
Hi Melissa and Aparna,

I face a similar error as Aparna, so here goes:

1. OS: Windows XP Pro SP2
2. Java: Sun Java 6 Update 6 (Java SE Development Kit 6u6)
3. ImageJ: 1.40g

Not sure if you want an oib image file from me too. Email me anytime for it.
I can open Zeiss LSM 510 .lsm files with no errors. Thanks for your help!

Error when I use File->Open->myfile.oib:
java.util.NoSuchElementException
        at java.util.StringTokenizer.nextToken(Unknown Source)
        at loci.formats.POITools.setupFile(POITools.java:197)
        at loci.formats.POITools.getFileSize(POITools.java:114)
        at loci.formats.POITools.getDocumentStream(POITools.java:89)
        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
        at loci.formats.FormatReader.setId(FormatReader.java:633)
        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
        at loci.plugins.Importer.run(Importer.java:145)
        at loci.plugins.LociImporter.run(LociImporter.java:74)
        at ij.IJ.runUserPlugIn(IJ.java:158)
        at ij.IJ.runPlugIn(IJ.java:124)
        at ij.IJ.runPlugIn(IJ.java:113)
        at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:253)
        at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
        at ij.IJ.runUserPlugIn(IJ.java:158)
        at ij.IJ.runPlugIn(IJ.java:124)
        at ij.IJ.runPlugIn(IJ.java:113)
        at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:304)
        at ij.io.Opener.openImage(Opener.java:233)
        at ij.io.Opener.openImage(Opener.java:249)
        at ij.io.Opener.open(Opener.java:116)
        at ij.io.Opener.open(Opener.java:55)
        at ij.plugin.Commands.run(Commands.java:23)
        at ij.IJ.runPlugIn(IJ.java:131)
        at ij.Executer.runCommand(Executer.java:104)
        at ij.Executer.run(Executer.java:58)
        at java.lang.Thread.run(Unknown Source)

A slightly different error when I use Plugins->LOCI->Bioformats Importer->myfile.oib
java.util.NoSuchElementException
        at java.util.StringTokenizer.nextToken(StringTokenizer.java:332)
        at loci.formats.POITools.setupFile(POITools.java:197)
        at loci.formats.POITools.getFileSize(POITools.java:114)
        at loci.formats.POITools.getDocumentStream(POITools.java:89)
        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
        at loci.formats.FormatReader.setId(FormatReader.java:633)
        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
        at loci.plugins.Importer.run(Importer.java:145)
        at loci.plugins.LociImporter.run(LociImporter.java:74)
        at ij.IJ.runUserPlugIn(IJ.java:158)
        at ij.IJ.runPlugIn(IJ.java:124)
        at ij.Executer.runCommand(Executer.java:104)
        at ij.Executer.run(Executer.java:58)
        at java.lang.Thread.run(Thread.java:619)

aparna sadananda wrote
Hi Melissa!
I am furnishing the details you had asked for:
1)  OS- Windows Vista Home Basic
2)  Java Plugin 1.1
3)  Image J version- 1.37v.
The contents of the exception window that I get while opening an oib file
are:
java.util.NoSuchElementException
 at java.util.StringTokenizer.nextToken(Unknown Source)
 at loci.formats.POITools.setupFile(POITools.java:197)
 at loci.formats.POITools.getFileSize(POITools.java:114)
 at loci.formats.POITools.getDocumentStream(POITools.java:89)
 at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
 at loci.formats.FormatReader.setId(FormatReader.java:633)
 at loci.formats.FormatHandler.setId(FormatHandler.java:134)
 at loci.plugins.Importer.run(Importer.java:145)
 at loci.plugins.LociImporter.run(LociImporter.java:74)
 at ij.IJ.runUserPlugIn(IJ.java:266)
 at ij.IJ.runPlugIn(IJ.java:120)
 at ij.Executer.runCommand(Executer.java:95)
 at ij.Executer.run(Executer.java:49)
 at java.lang.Thread.run(Unknown Source)

I will send the 13.2 mb oib file in a separate mail.
Regards,
Aparna




On Sat, May 24, 2008 at 6:40 PM, Melissa Linkert <linkert@wisc.edu> wrote:

> Hi Aparna,
> I'm sorry to hear that Bio-Formats is not working correctly for you.  We
> (the Bio-Formats developers) would be happy to fix this, but we need a
> little more information first.
>
> First of all, are you using the latest release of Bio-Formats (dated 17
> April, 2008)?  If not, please upgrade to the latest version and see if the
> problem is fixed.  To check the version, select "About>Plugins>LOCI
> Plugins"
> in ImageJ.
>
> If you are using the latest version of Bio-Formats, please supply the
> following information:
>
> 1) the operating system that you are using
> 2) the version of Java that you are using
> 3) the version of ImageJ that you are using
> 4) the exact contents of the "Exception" window - either a screenshot, or
> copy-and-pasted text
> 5) if possible, an OIB file that produces this problem (I will send details
> in a private email)
>
> Regards,
> -Melissa
>
> On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
> aparnasadananda@gmail.com> wrote:
>
> > Hi all,
> > I wish to open files of the oib format using Image J. For this, I
> > downloaded
> > the Bioformats reader and installed the zipped file in the Plugins folder
> > of
> > Image J files. To open the oib format file, I click on the plugins menu,
> > then the Loci tab followed by Bioformats importer. Then I browse for the
> > oib
> > file and click open. On doing this, I get a window titled "Exception".
> > Can anyone tell me, where I am wrong and how I can get Bioformats reader
> to
> > read my oib files?
> >
> > Thanks in Advance,
> > Aparna.
> >
>
ros1
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Re: oib reader

ros1
In reply to this post by Melissa Linkert
Hi Melissa,
I have the same problem with oib files. I have windows2000, java 6 and I´m using the mcmaster-provided imageJ plugin bunch. Still the error message is the same.

Melissa Linkert wrote
Hi Aparna,
I'm sorry to hear that Bio-Formats is not working correctly for you.  We
(the Bio-Formats developers) would be happy to fix this, but we need a
little more information first.

First of all, are you using the latest release of Bio-Formats (dated 17
April, 2008)?  If not, please upgrade to the latest version and see if the
problem is fixed.  To check the version, select "About>Plugins>LOCI Plugins"
in ImageJ.

If you are using the latest version of Bio-Formats, please supply the
following information:

1) the operating system that you are using
2) the version of Java that you are using
3) the version of ImageJ that you are using
4) the exact contents of the "Exception" window - either a screenshot, or
copy-and-pasted text
5) if possible, an OIB file that produces this problem (I will send details
in a private email)

Regards,
-Melissa

On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
aparnasadananda@gmail.com> wrote:

> Hi all,
> I wish to open files of the oib format using Image J. For this, I
> downloaded
> the Bioformats reader and installed the zipped file in the Plugins folder
> of
> Image J files. To open the oib format file, I click on the plugins menu,
> then the Loci tab followed by Bioformats importer. Then I browse for the
> oib
> file and click open. On doing this, I get a window titled "Exception".
> Can anyone tell me, where I am wrong and how I can get Bioformats reader to
> read my oib files?
>
> Thanks in Advance,
> Aparna.
>
Melissa Linkert
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Re: oib reader

Melissa Linkert
In reply to this post by Fong Koh
Hi Fong (and Aparna),
The latest daily build of Bio-Formats (available at
http://loci.wisc.edu/ome/formats.html) should solve this problem.  If you
upgrade to the latest daily build and continue to experience problems,
please let me know.

Regards,
-Melissa

On Wed, Jun 4, 2008 at 3:32 AM, Fong Koh <[hidden email]> wrote:

> Hi Melissa and Aparna,
>
> I face a similar error as Aparna, so here goes:
>
> 1. OS: Windows XP Pro SP2
> 2. Java: Sun Java 6 Update 6 (Java SE Development Kit 6u6)
> 3. ImageJ: 1.40g
>
> Not sure if you want an oib image file from me too. Email me anytime for
> it.
> I can open Zeiss LSM 510 .lsm files with no errors. Thanks for your help!
>
> Error when I use File->Open->myfile.oib:
> java.util.NoSuchElementException
>        at java.util.StringTokenizer.nextToken(Unknown Source)
>        at loci.formats.POITools.setupFile(POITools.java:197)
>        at loci.formats.POITools.getFileSize(POITools.java:114)
>        at loci.formats.POITools.getDocumentStream(POITools.java:89)
>        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
>        at loci.formats.FormatReader.setId(FormatReader.java:633)
>        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
>        at loci.plugins.Importer.run(Importer.java:145)
>        at loci.plugins.LociImporter.run(LociImporter.java:74)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.IJ.runPlugIn(IJ.java:113)
>        at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:253)
>        at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.IJ.runPlugIn(IJ.java:113)
>        at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:304)
>        at ij.io.Opener.openImage(Opener.java:233)
>        at ij.io.Opener.openImage(Opener.java:249)
>        at ij.io.Opener.open(Opener.java:116)
>        at ij.io.Opener.open(Opener.java:55)
>        at ij.plugin.Commands.run(Commands.java:23)
>        at ij.IJ.runPlugIn(IJ.java:131)
>        at ij.Executer.runCommand(Executer.java:104)
>        at ij.Executer.run(Executer.java:58)
>        at java.lang.Thread.run(Unknown Source)
>
> A slightly different error when I use Plugins->LOCI->Bioformats
> Importer->myfile.oib
> java.util.NoSuchElementException
>        at java.util.StringTokenizer.nextToken(StringTokenizer.java:332)
>        at loci.formats.POITools.setupFile(POITools.java:197)
>        at loci.formats.POITools.getFileSize(POITools.java:114)
>        at loci.formats.POITools.getDocumentStream(POITools.java:89)
>        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
>        at loci.formats.FormatReader.setId(FormatReader.java:633)
>        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
>        at loci.plugins.Importer.run(Importer.java:145)
>        at loci.plugins.LociImporter.run(LociImporter.java:74)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.Executer.runCommand(Executer.java:104)
>        at ij.Executer.run(Executer.java:58)
>        at java.lang.Thread.run(Thread.java:619)
>
>
> aparna sadananda wrote:
> >
> > Hi Melissa!
> > I am furnishing the details you had asked for:
> > 1)  OS- Windows Vista Home Basic
> > 2)  Java Plugin 1.1
> > 3)  Image J version- 1.37v.
> > The contents of the exception window that I get while opening an oib file
> > are:
> > java.util.NoSuchElementException
> >  at java.util.StringTokenizer.nextToken(Unknown Source)
> >  at loci.formats.POITools.setupFile(POITools.java:197)
> >  at loci.formats.POITools.getFileSize(POITools.java:114)
> >  at loci.formats.POITools.getDocumentStream(POITools.java:89)
> >  at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
> >  at loci.formats.FormatReader.setId(FormatReader.java:633)
> >  at loci.formats.FormatHandler.setId(FormatHandler.java:134)
> >  at loci.plugins.Importer.run(Importer.java:145)
> >  at loci.plugins.LociImporter.run(LociImporter.java:74)
> >  at ij.IJ.runUserPlugIn(IJ.java:266)
> >  at ij.IJ.runPlugIn(IJ.java:120)
> >  at ij.Executer.runCommand(Executer.java:95)
> >  at ij.Executer.run(Executer.java:49)
> >  at java.lang.Thread.run(Unknown Source)
> >
> > I will send the 13.2 mb oib file in a separate mail.
> > Regards,
> > Aparna
> >
> >
> >
> >
> > On Sat, May 24, 2008 at 6:40 PM, Melissa Linkert <[hidden email]>
> wrote:
> >
> >> Hi Aparna,
> >> I'm sorry to hear that Bio-Formats is not working correctly for you.  We
> >> (the Bio-Formats developers) would be happy to fix this, but we need a
> >> little more information first.
> >>
> >> First of all, are you using the latest release of Bio-Formats (dated 17
> >> April, 2008)?  If not, please upgrade to the latest version and see if
> >> the
> >> problem is fixed.  To check the version, select "About>Plugins>LOCI
> >> Plugins"
> >> in ImageJ.
> >>
> >> If you are using the latest version of Bio-Formats, please supply the
> >> following information:
> >>
> >> 1) the operating system that you are using
> >> 2) the version of Java that you are using
> >> 3) the version of ImageJ that you are using
> >> 4) the exact contents of the "Exception" window - either a screenshot,
> or
> >> copy-and-pasted text
> >> 5) if possible, an OIB file that produces this problem (I will send
> >> details
> >> in a private email)
> >>
> >> Regards,
> >> -Melissa
> >>
> >> On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
> >> [hidden email]> wrote:
> >>
> >> > Hi all,
> >> > I wish to open files of the oib format using Image J. For this, I
> >> > downloaded
> >> > the Bioformats reader and installed the zipped file in the Plugins
> >> folder
> >> > of
> >> > Image J files. To open the oib format file, I click on the plugins
> >> menu,
> >> > then the Loci tab followed by Bioformats importer. Then I browse for
> >> the
> >> > oib
> >> > file and click open. On doing this, I get a window titled "Exception".
> >> > Can anyone tell me, where I am wrong and how I can get Bioformats
> >> reader
> >> to
> >> > read my oib files?
> >> >
> >> > Thanks in Advance,
> >> > Aparna.
> >> >
> >>
> >
> >
>
> --
> View this message in context:
> http://www.nabble.com/oib-reader-tp17432464p17641347.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
Fong Koh
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Re: oib reader

Fong Koh
I verify that the daily build for today solves the problem.

Thanks!
Fong

Melissa Linkert wrote
Hi Fong (and Aparna),
The latest daily build of Bio-Formats (available at
http://loci.wisc.edu/ome/formats.html) should solve this problem.  If you
upgrade to the latest daily build and continue to experience problems,
please let me know.

Regards,
-Melissa

On Wed, Jun 4, 2008 at 3:32 AM, Fong Koh <kohfm@randomtots.com> wrote:

> Hi Melissa and Aparna,
>
> I face a similar error as Aparna, so here goes:
>
> 1. OS: Windows XP Pro SP2
> 2. Java: Sun Java 6 Update 6 (Java SE Development Kit 6u6)
> 3. ImageJ: 1.40g
>
> Not sure if you want an oib image file from me too. Email me anytime for
> it.
> I can open Zeiss LSM 510 .lsm files with no errors. Thanks for your help!
>
> Error when I use File->Open->myfile.oib:
> java.util.NoSuchElementException
>        at java.util.StringTokenizer.nextToken(Unknown Source)
>        at loci.formats.POITools.setupFile(POITools.java:197)
>        at loci.formats.POITools.getFileSize(POITools.java:114)
>        at loci.formats.POITools.getDocumentStream(POITools.java:89)
>        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
>        at loci.formats.FormatReader.setId(FormatReader.java:633)
>        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
>        at loci.plugins.Importer.run(Importer.java:145)
>        at loci.plugins.LociImporter.run(LociImporter.java:74)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.IJ.runPlugIn(IJ.java:113)
>        at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:253)
>        at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.IJ.runPlugIn(IJ.java:113)
>        at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:304)
>        at ij.io.Opener.openImage(Opener.java:233)
>        at ij.io.Opener.openImage(Opener.java:249)
>        at ij.io.Opener.open(Opener.java:116)
>        at ij.io.Opener.open(Opener.java:55)
>        at ij.plugin.Commands.run(Commands.java:23)
>        at ij.IJ.runPlugIn(IJ.java:131)
>        at ij.Executer.runCommand(Executer.java:104)
>        at ij.Executer.run(Executer.java:58)
>        at java.lang.Thread.run(Unknown Source)
>
> A slightly different error when I use Plugins->LOCI->Bioformats
> Importer->myfile.oib
> java.util.NoSuchElementException
>        at java.util.StringTokenizer.nextToken(StringTokenizer.java:332)
>        at loci.formats.POITools.setupFile(POITools.java:197)
>        at loci.formats.POITools.getFileSize(POITools.java:114)
>        at loci.formats.POITools.getDocumentStream(POITools.java:89)
>        at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
>        at loci.formats.FormatReader.setId(FormatReader.java:633)
>        at loci.formats.FormatHandler.setId(FormatHandler.java:134)
>        at loci.plugins.Importer.run(Importer.java:145)
>        at loci.plugins.LociImporter.run(LociImporter.java:74)
>        at ij.IJ.runUserPlugIn(IJ.java:158)
>        at ij.IJ.runPlugIn(IJ.java:124)
>        at ij.Executer.runCommand(Executer.java:104)
>        at ij.Executer.run(Executer.java:58)
>        at java.lang.Thread.run(Thread.java:619)
>
>
> aparna sadananda wrote:
> >
> > Hi Melissa!
> > I am furnishing the details you had asked for:
> > 1)  OS- Windows Vista Home Basic
> > 2)  Java Plugin 1.1
> > 3)  Image J version- 1.37v.
> > The contents of the exception window that I get while opening an oib file
> > are:
> > java.util.NoSuchElementException
> >  at java.util.StringTokenizer.nextToken(Unknown Source)
> >  at loci.formats.POITools.setupFile(POITools.java:197)
> >  at loci.formats.POITools.getFileSize(POITools.java:114)
> >  at loci.formats.POITools.getDocumentStream(POITools.java:89)
> >  at loci.formats.in.FV1000Reader.initFile(FV1000Reader.java:230)
> >  at loci.formats.FormatReader.setId(FormatReader.java:633)
> >  at loci.formats.FormatHandler.setId(FormatHandler.java:134)
> >  at loci.plugins.Importer.run(Importer.java:145)
> >  at loci.plugins.LociImporter.run(LociImporter.java:74)
> >  at ij.IJ.runUserPlugIn(IJ.java:266)
> >  at ij.IJ.runPlugIn(IJ.java:120)
> >  at ij.Executer.runCommand(Executer.java:95)
> >  at ij.Executer.run(Executer.java:49)
> >  at java.lang.Thread.run(Unknown Source)
> >
> > I will send the 13.2 mb oib file in a separate mail.
> > Regards,
> > Aparna
> >
> >
> >
> >
> > On Sat, May 24, 2008 at 6:40 PM, Melissa Linkert <linkert@wisc.edu>
> wrote:
> >
> >> Hi Aparna,
> >> I'm sorry to hear that Bio-Formats is not working correctly for you.  We
> >> (the Bio-Formats developers) would be happy to fix this, but we need a
> >> little more information first.
> >>
> >> First of all, are you using the latest release of Bio-Formats (dated 17
> >> April, 2008)?  If not, please upgrade to the latest version and see if
> >> the
> >> problem is fixed.  To check the version, select "About>Plugins>LOCI
> >> Plugins"
> >> in ImageJ.
> >>
> >> If you are using the latest version of Bio-Formats, please supply the
> >> following information:
> >>
> >> 1) the operating system that you are using
> >> 2) the version of Java that you are using
> >> 3) the version of ImageJ that you are using
> >> 4) the exact contents of the "Exception" window - either a screenshot,
> or
> >> copy-and-pasted text
> >> 5) if possible, an OIB file that produces this problem (I will send
> >> details
> >> in a private email)
> >>
> >> Regards,
> >> -Melissa
> >>
> >> On Fri, May 23, 2008 at 12:08 PM, aparna sadananda <
> >> aparnasadananda@gmail.com> wrote:
> >>
> >> > Hi all,
> >> > I wish to open files of the oib format using Image J. For this, I
> >> > downloaded
> >> > the Bioformats reader and installed the zipped file in the Plugins
> >> folder
> >> > of
> >> > Image J files. To open the oib format file, I click on the plugins
> >> menu,
> >> > then the Loci tab followed by Bioformats importer. Then I browse for
> >> the
> >> > oib
> >> > file and click open. On doing this, I get a window titled "Exception".
> >> > Can anyone tell me, where I am wrong and how I can get Bioformats
> >> reader
> >> to
> >> > read my oib files?
> >> >
> >> > Thanks in Advance,
> >> > Aparna.
> >> >
> >>
> >
> >
>
> --
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> http://www.nabble.com/oib-reader-tp17432464p17641347.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
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