open images in a directory

[Braekevelt Martin]

Dear,

I want to open a set of images which are stored in a directory.
By the batch tutorial I can manage to get the directory but I cannot find to open all images at once. Only one by one.
Once I have all images open I think I can use the array in batch mode to process them all I guess.
Any suggestion how I can do this in a macro ?

Thanks in advance
Kindest regards,
Martin.
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[Herbie]

Dear Martin,

you don't really tell us what you want to do with your images.

Do you really need to have all of them open or can you process one after the other?

In the latter case, you need a loop to open, then process and finally close one image after the other.

ImageJ comes with a lot of example macros
    <https://imagej.nih.gov/ij/macros/>
and some, e.g.
    "BatchProcessFolders",
deal with what you need to open images from a directory one after the other.

HTH

Herbie

:::::::::::::::::::::::::::::::::::::::::::::::
Am 06.10.16 um 10:01 schrieb Braekevelt Martin:
> Dear,
>
> I want to open a set of images which are stored in a directory. By
> the batch tutorial I can manage to get the directory but I cannot
> find to open all images at once. Only one by one. Once I have all
> images open I think I can use the array in batch mode to process them
> all I guess. Any suggestion how I can do this in a macro ?
>
> Thanks in advance Kindest regards, Martin.

[Braekevelt Martin]

Dear Herbie,

Thanks for the help.
What I want is a macro that opens all images in a folder.
This macro I want to use by a button on an action bar.
I have different tasks that I want to put in different macro's so that I have flexibility of what I want to do, one of them is having a manual point count by use of a grid, the other one is roughness measurements on profiles. These are tests that need be installed on systems used by other microscopists of different level so it must be user friendly without have a lot of experience in imageJ.
The primary need is open image folders and all images need be open.

Thanks in advance for the help.

Kindest regards,
Martin.

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Herbie
Sent: Thursday, October 06, 2016 12:46 PM
To: [hidden email]
Subject: Re: open images in a directory

Dear Martin,

you don't really tell us what you want to do with your images.

Do you really need to have all of them open or can you process one after the other?

In the latter case, you need a loop to open, then process and finally close one image after the other.

ImageJ comes with a lot of example macros
    <https://imagej.nih.gov/ij/macros/>
and some, e.g.
    "BatchProcessFolders",
deal with what you need to open images from a directory one after the other.

HTH

Herbie

:::::::::::::::::::::::::::::::::::::::::::::::
Am 06.10.16 um 10:01 schrieb Braekevelt Martin:
> Dear,
>
> I want to open a set of images which are stored in a directory. By the
> batch tutorial I can manage to get the directory but I cannot find to
> open all images at once. Only one by one. Once I have all images open
> I think I can use the array in batch mode to process them all I guess.
> Any suggestion how I can do this in a macro ?
>
> Thanks in advance Kindest regards, Martin.



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[Herbie]

Dear Martin,

if you only want to open the images in a folder and if you ae sure that
the folder contains only images that ImageJ can open then you may try
the following macro:

///////////////
dir = getDirectory( "Choose the Directory" );
list = getFileList( dir );
for ( i=0; i<list.length; i++ ) {
    open( dir + list[i] );
}
///////////////

HTH

Herbie

:::::::::::::::::::::::::::::::::::::::::::::::
Am 06.10.16 um 13:14 schrieb Braekevelt Martin:

> Dear Herbie,
>
> Thanks for the help. What I want is a macro that opens all images in
> a folder. This macro I want to use by a button on an action bar. I
> have different tasks that I want to put in different macro's so that
> I have flexibility of what I want to do, one of them is having a
> manual point count by use of a grid, the other one is roughness
> measurements on profiles. These are tests that need be installed on
> systems used by other microscopists of different level so it must be
> user friendly without have a lot of experience in imageJ. The primary
> need is open image folders and all images need be open.
>
> Thanks in advance for the help.
>
> Kindest regards, Martin.
>
> -----Original Message----- From: ImageJ Interest Group
> [mailto:[hidden email]] On Behalf Of Herbie Sent: Thursday,
> October 06, 2016 12:46 PM To: [hidden email] Subject: Re: open
> images in a directory
>
> Dear Martin,
>
> you don't really tell us what you want to do with your images.
>
> Do you really need to have all of them open or can you process one
> after the other?
>
> In the latter case, you need a loop to open, then process and finally
> close one image after the other.
>
> ImageJ comes with a lot of example macros
> <https://imagej.nih.gov/ij/macros/> and some, e.g.
> "BatchProcessFolders", deal with what you need to open images from a
> directory one after the other.
>
> HTH
>
> Herbie
>
> ::::::::::::::::::::::::::::::::::::::::::::::: Am 06.10.16 um 10:01
> schrieb Braekevelt Martin:
>> Dear,
>>
>> I want to open a set of images which are stored in a directory. By
>> the batch tutorial I can manage to get the directory but I cannot
>> find to open all images at once. Only one by one. Once I have all
>> images open I think I can use the array in batch mode to process
>> them all I guess. Any suggestion how I can do this in a macro ?
>>
>> Thanks in advance Kindest regards, Martin.
>
>
>
> -- View this message in context:
> http://imagej.1557.x6.nabble.com/open-images-in-a-directory-tp5017299p5017300.html
>
>

Sent from the ImageJ mailing list archive at Nabble.com.
>
> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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[jerie]

Dear Martin,

the run("Image Sequence...") command may be the easiest option if the
images have the same format.

Good success, Jens

Dr. Jens Rietdorf, visiting scientist @ center for technological
development in health CDTS, Oswaldo Cruz Foundation Fiocruz, Rio de Janeiro
Brasil.

On Thu, Oct 6, 2016 at 5:01 AM, Braekevelt Martin <
[hidden email]> wrote:
>
> I want to open a set of images which are stored in a directory.
>
> Any suggestion how I can do this in a macro ?

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