plot profile in a stack

[Gaby Shemer]

Hi,
I arrange images in a stack, and would like to draw a profile of a line
within the image in the same place in each image (similar to multi-measure
for particles).
I would appreciate it if a someone could assist me in doing that.
Thank you,
Gabriel Shemer

[Wayne Rasband]

> Hi,
> I arrange images in a stack, and would like to draw a profile of a line
> within the image in the same place in each image (similar to
> multi-measure
> for particles).
> I would appreciate it if a someone could assist me in doing that.

The StackProfilePlot macro at

      http://rsb.info.nih.gov/ij/macros/StackProfilePlot.txt

does this. I found this macro by entering "stack profile" (without the
quotes) into the search box on the ImageJ home page.

-wayne

[flowman]

The StackProfilePlot macro is very useful for analyzing images in a stack.
I'd like to know how to save the list data in each line plot after applying this macro.

Rasband Wayne wrote

> Hi,
> I arrange images in a stack, and would like to draw a profile of a line
> within the image in the same place in each image (similar to
> multi-measure
> for particles).
> I would appreciate it if a someone could assist me in doing that.

The StackProfilePlot macro at

      http://rsb.info.nih.gov/ij/macros/StackProfilePlot.txt

does this. I found this macro by entering "stack profile" (without the
quotes) into the search box on the ImageJ home page.

-wayne

[Wayne Rasband]

On Sep 16, 2008, at 9:43 AM, flowman wrote:

> The StackProfilePlot macro is very useful for analyzing images in a
> stack.
> I'd like to know how to save the list data in each line plot after
> applying
> this macro.

Instead the StackProfilePlot macro, use Image>Stacks>Reslice (with
"Avoid Interpolation" enabled) and File>Save As>Text Image.

-wayne

>
>
> Rasband Wayne wrote:
>>
>>> Hi,
>>> I arrange images in a stack, and would like to draw a profile of a
>>> line
>>> within the image in the same place in each image (similar to
>>> multi-measure
>>> for particles).
>>> I would appreciate it if a someone could assist me in doing that.
>>
>> The StackProfilePlot macro at
>>
>>       http://rsb.info.nih.gov/ij/macros/StackProfilePlot.txt
>>
>> does this. I found this macro by entering "stack profile" (without the
>> quotes) into the search box on the ImageJ home page.
>>
>> -wayne
>>
>>
>
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>