plugin for two-point correlation functions ?

[Paul Stutzman]

Has anyone developed an ImageJ plugin to calculate two-point  
correlation functions of selected features of a microstructure from a  
thresholded image following the procedures detailed in: J. G.  
Berryman and S. C. Blair, ``Use of digital image analysis to estimate  
fluid permeability of porous materials I. Application of two-point  
correlation functions,'' J. Appl. Phys. 60, 1930-1938 (1986) ?


Paul Stutzman
National Institute of Standards and Technology
100 Bureau Drive
Gaithersburg, MD 20899-8615

[Anna Barnes]

hi there
I'm trying to import 11250 dicom images but I get this error. I tried  
increasing the memory and I'm up to 1500MB I can import 9999 but not  
10000 images.  What's the maximum memory I can assign Imagej (imagej  
1.36b, unix, solaris 8).

java.lang.IllegalArgumentException: Argument out of range: 0
at ij.ImageStack.getSliceLabel(ImageStack.java:187)
at ij.plugin.DICOM_Sorter.sortStack(DICOM_Sorter.java:42)
at ij.plugin.DICOM_Sorter.sort(DICOM_Sorter.java:33)
at Import_Dicom_Sequence.run(Import_Dicom_Sequence.java:213)
at ij.IJ.runUserPlugIn(IJ.java:273)
at ij.IJ.runPlugIn(IJ.java:117)
at ij.Executer.runPlugIn(Executer.java:171)
at ij.Executer.runCommand(Executer.java:133)
at ij.Executer.run(Executer.java:63)
at java.lang.Thread.run(Thread.java:484)

Thanks
Anna

Anna Barnes, PhD
fMRI Research Laboratory
Department of Radiology
Columbia University College of Physicians and Surgeons
710 W168th St
New York, NY10032
USA
[phone]

[Wayne Rasband]

ImageJ 1.37m, due by the end of this week, fixes a bug which prevents
ImageJ from importing more than 10,000 DICOM images.

-wayne

On Aug 8, 2006, at 11:45 AM, Anna Barnes wrote:

> hi there
> I'm trying to import 11250 dicom images but I get this error. I tried
> increasing the memory and I'm up to 1500MB I can import 9999 but not
> 10000 images.  What's the maximum memory I can assign Imagej (imagej
> 1.36b, unix, solaris 8).
>
> java.lang.IllegalArgumentException: Argument out of range: 0
> at ij.ImageStack.getSliceLabel(ImageStack.java:187)
> at ij.plugin.DICOM_Sorter.sortStack(DICOM_Sorter.java:42)
> at ij.plugin.DICOM_Sorter.sort(DICOM_Sorter.java:33)
> at Import_Dicom_Sequence.run(Import_Dicom_Sequence.java:213)
> at ij.IJ.runUserPlugIn(IJ.java:273)
> at ij.IJ.runPlugIn(IJ.java:117)
> at ij.Executer.runPlugIn(Executer.java:171)
> at ij.Executer.runCommand(Executer.java:133)
> at ij.Executer.run(Executer.java:63)
> at java.lang.Thread.run(Thread.java:484)
>
> Thanks
> Anna
>
> Anna Barnes, PhD
> fMRI Research Laboratory
> Department of Radiology
> Columbia University College of Physicians and Surgeons
> 710 W168th St
> New York, NY10032
> USA
> [phone]
>

[Anna Barnes]

Hi
Has anyone installed http://www.iftm.de/dicom/dcmimex.htm (dcmie)  
successfully on a macintosh (G4 10.4.7)? I get the error message  
Dcm_import plugin not found.

Cheers
Anna