question FIJI channels

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question FIJI channels

Pablo Munoz-2
Dear All
I have a very simple question but  cause me a lot of confusion , the question is the next.
When I open my images with FIJI , I separate the channel but the program show me the images in greyscale and 8 bit and I take my images in 4 channel (sequential option in Leica microscopes) so when I open this images I only see in the upper part the letter C=1, C=2, C=3, C=4 so my doubt is regarding with this information, this C are the channel of my images?
So then I can recognized my stain because I have same subcelular distribution with 2 markers so I can not distinguish it.

Hope can someone give a guide

Thank you for read and the patience

Pablo
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Re: question FIJI channels

ctrueden
Hi Pablo,

> this C are the channel of my images?

Yes, the C dimension is the channels.

From your description, I do not understand your problem. Is it that you are
uncertain of the order of your channels, and since you cannot tell them
apart visually, you do not know which is which?

When you open your data using the Bio-Formats Importer plugin, then use
Show Info on your image, perhaps it will show more information about each
channel (such as emission wavelength) in the list? Depends on the file
format.

Regards,
Curtis


On Sun, Mar 10, 2013 at 6:58 PM, Pablo Munoz <[hidden email]> wrote:

> Dear All
> I have a very simple question but  cause me a lot of confusion , the
> question is the next.
> When I open my images with FIJI , I separate the channel but the program
> show me the images in greyscale and 8 bit and I take my images in 4 channel
> (sequential option in Leica microscopes) so when I open this images I only
> see in the upper part the letter C=1, C=2, C=3, C=4 so my doubt is
> regarding with this information, this C are the channel of my images?
> So then I can recognized my stain because I have same subcelular
> distribution with 2 markers so I can not distinguish it.
>
> Hope can someone give a guide
>
> Thank you for read and the patience
>
> Pablo
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html