questions about ImageJ javascript scripts language

[Xiuxia Zhang]

 I am a PhD. candidate of Institute of Computing Technology, Chinese
Academy of   Sciences.
My research interest is image processing.
I am a user of ImageJ.  Recently I am writing ImageJ scripts.  Mostly I
refer this page
http://imagej.nih.gov/ij/developer/macro/functions.html
I also use Plugins->Macros->Record to generate the scripts automaticly.
.

However I find some commands  that not written in the documents I listed
above.
I have a need to read lots of text Image automaticly and save as  Tiff
image.

I need the comands Such as "File-->import-->textImage".
The macros generated is not correct for javascript, beanshell or java.
It's only correct as Fiji's Macro language. I can not use Js, java or
beanshell language.
I am using ImageJ 1.49P.
I just wonder what should I do if I can not macros I needed of Javascript
in the documents.


Here is the code snips of each language.  I also imported necessary
packages before these codes.
Macro
IJ.run("Text Image... ",
"open=/home/xiuxia/home2/result/predict_14img.txt");
IJ.run("Conversions...", " ");
IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
imp.close();


javascript:
imp = IJ.getImage();
IJ.run("Text Image... ",
"open=/home/xiuxia/home2/result/predict_14img.txt");
IJ.run("Conversions...", " ");
IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
imp.close();

Beanshell
imp = IJ.getImage();
IJ.run("Text Image... ",
"open=/home/xiuxia/home2/result/predict_14img.txt");
IJ.run("Conversions...", " ");
IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
imp.close();

java
*import ij.*;*
*import ij.process.*;*
*import ij.gui.*;*
*import java.awt.*;*
*import ij.plugin.*;*
*import ij.plugin.frame.*;*

*public class My_Plugin implements PlugIn {*

* public void run(String arg) {*
* ImagePlus imp = IJ.getImage();*
* IJ.run("Text Image... ",
"open=/home/xiuxia/home2/result/predict_14img.txt");*
* IJ.run("Conversions...", " ");*
* IJ.saveAs(imp, "Tiff",
"/home/xiuxia/home2/result/predict_14img0000.tif");*
* imp.close();*
* }*

*}*


Thanks,
--
* Xiuxia **Zhang*
*Institute of Computing Technology  Chinese Academy of Sciences*

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Emanuele Martini]

Hi Xiuxia,
maybe I am wrong but I think that in your *not* imagej macro code, you are trying to getImage before opening it.

So I think that you could try like that:
++++

IJ.run("Text Image... ",
"open=/home/xiuxia/home2/result/predict_14img.txt");

imp = IJ.getImage();

IJ.run("Conversions...", " ");
IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
imp.close();
+++

since the opening function is IJ.run("text image.....)
and then you can get it via IJ.getImage

but maybe I'm wrong...

Have a nice day,
Emanuele Martini

[Xiuxia Zhang]

 Thanks,  Emanuele. You are right. Now my code works.
Here is the working code.

importClass(Packages.ij.IJ);
IJ.run("Text Image... ","open=/home/xiuxia/home2/result/predict_14img.txt");
imp = IJ.getImage();
IJ.run("Conversions...", " ");
IJ.saveAsTiff(imp, "/home/xiuxia/home2/result/predict_14img00xx.tif");
imp.close();

On Thu, Jul 23, 2015 at 3:36 PM, Emanuele Martini <[hidden email]>
wrote:

> Hi Xiuxia,
> maybe I am wrong but I think that in your *not* imagej macro code, you are
> trying to getImage before opening it.
>
> So I think that you could try like that:
> ++++
>
> IJ.run("Text Image... ",
> "open=/home/xiuxia/home2/result/predict_14img.txt");
>
> *imp = IJ.getImage();*
>
> IJ.run("Conversions...", " ");
> IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
> imp.close();
> +++
>
> since the opening function is IJ.run("text image.....)
> and then you can get it via IJ.getImage
>
> but maybe I'm wrong...
>
> Have a nice day,
> Emanuele Martini
>
>
>
>
> -----
> Image Analyst @Ifom-IEO research campus -MI-
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/questions-about-ImageJ-javascript-scripts-language-tp5013709p5013711.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
* Xiuxia **Zhang*
*Institute of Computing Technology  Chinese Academy of Sciences*

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Rasband, Wayne (NIH/NIMH) [E]]

On Jul 22, 2015, at 10:41 PM, Xiuxia Zhang <[hidden email]> wrote:

>
> I am a PhD. candidate of Institute of Computing Technology, Chinese
> Academy of   Sciences.
> My research interest is image processing.
> I am a user of ImageJ.  Recently I am writing ImageJ scripts.  Mostly I
> refer this page
> http://imagej.nih.gov/ij/developer/macro/functions.html
> I also use Plugins->Macros->Record to generate the scripts automaticly.
>
> However I find some commands  that not written in the documents I listed
> above.
> I have a need to read lots of text Image automaticly and save as  Tiff
> image.
>
> I need the comands Such as "File-->import-->textImage".
> The macros generated is not correct for javascript, beanshell or java.
> It's only correct as Fiji's Macro language. I can not use Js, java or
> beanshell language.

This bug is fixed in the latest ImageJ daily build (1.50b1). The recorder now generates something like

  imp = IJ.openImage("/Users/wayne/boats.txt");
  IJ.saveAs(imp, "Tiff", "/Users/wayne/boats.tif");
  imp.close();

when you open a text image, save it in TIFF format and close it. The Process>Batch>Convert command now works with text images so you can use it to convert a folder of text images into another format.

-wayne

> I am using ImageJ 1.49P.
> I just wonder what should I do if I can not macros I needed of Javascript
> in the documents.
>
>
> Here is the code snips of each language.  I also imported necessary
> packages before these codes.
> Macro
> IJ.run("Text Image... ",
> "open=/home/xiuxia/home2/result/predict_14img.txt");
> IJ.run("Conversions...", " ");
> IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
> imp.close();
>
>
> javascript:
> imp = IJ.getImage();
> IJ.run("Text Image... ",
> "open=/home/xiuxia/home2/result/predict_14img.txt");
> IJ.run("Conversions...", " ");
> IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
> imp.close();
>
> Beanshell
> imp = IJ.getImage();
> IJ.run("Text Image... ",
> "open=/home/xiuxia/home2/result/predict_14img.txt");
> IJ.run("Conversions...", " ");
> IJ.saveAs(imp, "Tiff", "/home/xiuxia/home2/result/predict_14img0000.tif");
> imp.close();
>
> java
> *import ij.*;*
> *import ij.process.*;*
> *import ij.gui.*;*
> *import java.awt.*;*
> *import ij.plugin.*;*
> *import ij.plugin.frame.*;*
>
> *public class My_Plugin implements PlugIn {*
>
> * public void run(String arg) {*
> * ImagePlus imp = IJ.getImage();*
> * IJ.run("Text Image... ",
> "open=/home/xiuxia/home2/result/predict_14img.txt");*
> * IJ.run("Conversions...", " ");*
> * IJ.saveAs(imp, "Tiff",
> "/home/xiuxia/home2/result/predict_14img0000.tif");*
> * imp.close();*
> * }*
>
> *}*

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