requesting the instruction for imageJ
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Dear all
I want to find the center of gravity of an irregular tube. I used the plugin Skeletonize3D and AnalyseSkeleton, but I cannot find the value in millimeter or micrometer for Center of Gravity of that tube. Could you help me, please? Best Regards Kyaw Moe -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: requesting the instruction for imageJ
Re: requesting the instruction for imageJ
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Dear Professor
I can apply 3D object counter. First I change my image to black and white binary image by CTAn software. Then I open this dataset by Fiji and then, I use skeletonized plugin to find center axis. Then, I check the center axis by 3D viewer plugin. FInally, I use 3D objective counter plugin to calculate the value for Z axis, the vertical axis. For example, I got value as X is 35.610, Y is 49.505 and Z is 122.015. I want to express these value in micrometer. Could I change? How can I change? Please guide me as necessary. Sincerely KM On Mon, Sep 28, 2015 at 8:45 PM, Kyaw Moe <[hidden email]> wrote: > Thank Professor. I will try. > > > Sincerely > KM > > On Mon, Sep 28, 2015 at 4:26 PM, s c Narula <[hidden email]> wrote: > >> Try 3 D object counter Diameter J >> >> Prof S C Narula >> >> On Fri, Sep 25, 2015 at 6:08 PM, Kyaw Moe <[hidden email]> wrote: >> >> > [image: Boxbe] <https://www.boxbe.com/overview> This message is >> eligible >> > for Automatic Cleanup! ([hidden email]) Add cleanup rule >> > < >> https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3D2NCxLA5bPgHNClKUvXEHRRtX6Pf9F%252FDYP6lo%252FlVCUjvDTANwibmZivWWbbmrruA53b2XoBFZxSyl%252BjTWJDsmPRUKrQJPrmlBN0YtxOXO65d3MnU7WZ%252Fy%252Bx9MTt7gsgJYYXvNz3JKhqg%253D%26key%3DbaB38LdLyU09KSiDA2ZVowjHAsuhqGakGKhf1bmqs2A%253D&tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 >> > >> > | More info >> > < >> http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 >> > >> > >> > Thank Professor. >> > I will try. >> > >> > Sincerely >> > KM >> > >> > On Fri, Sep 25, 2015 at 2:47 AM, s c Narula <[hidden email]> wrote: >> > >> > > try thershold and then analyze >> > > >> > > >> > > Professor Narula >> > > >> > > On Thu, Sep 24, 2015 at 2:09 PM, Kyaw Moe <[hidden email]> >> wrote: >> > > >> > > > [image: Boxbe] <https://www.boxbe.com/overview> This message is >> > eligible >> > > > for Automatic Cleanup! ([hidden email]) Add cleanup rule >> > > > < >> > > >> > >> https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3DXUn1LXOLGHTafPVAumBxWMNvebtFTJRqx0Q%252BIvY7GORP066J3orEktUgvS0l%252FxiwjQ1GC57kiwoDnJXDpcmWUh9pWCJWUPHwhJihTdPRs1YYbgsRco%252FLwxXU4AP54OOFlzc3rWpvKJ8%253D%26key%3DqzI6EPhJC7Cao1kmwFT3c%252Ff5z1aNAOnmPoz63IvzlZA%253D&tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 >> > > > >> > > > | More info >> > > > < >> > > >> > >> http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 >> > > > >> > > > >> > > > Dear all >> > > > I want to find the center of gravity of an irregular >> > tube. >> > > I >> > > > used the plugin Skeletonize3D and AnalyseSkeleton, but I cannot find >> > the >> > > > value in millimeter or micrometer for Center of Gravity of that >> tube. >> > > Could >> > > > you help me, please? >> > > > >> > > > Best Regards >> > > > Kyaw Moe >> > > > >> > > > -- >> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > > >> > > > >> > > >> > > -- >> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > >> > >> > -- >> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > >> > >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: requesting the instruction for imageJ
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In reply to this post by Kyaw Moe
First open analyze then do set scale in image j this might help you
Prof S C Narula On Tue, Oct 6, 2015 at 12:26 PM, Kyaw Moe <[hidden email]> wrote: > [image: Boxbe] <https://www.boxbe.com/overview> This message is eligible > for Automatic Cleanup! ([hidden email]) Add cleanup rule > <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3DhyQLYsJS5oygfi%252B7bWWOlQA7RyUwctue8RXFtJp4TuZCbFbgGbLQwim2KU1c4fai%252FCobIyY2wSkp7dh1iAqUZAxxC2WLm8B67qZl1oAkREosuHT0OWugGXn2MgbmSRxp2oL48GYUy9I%253D%26key%3DfQfE6LIEPPi3D%252FXWCLagUEaePBpNQ4PuX56D0PGzsXw%253D&tc_serial=22872797984&tc_rand=638168180&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001> > | More info > <http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22872797984&tc_rand=638168180&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001> > > Dear Professor > I can apply 3D object counter. First I change my image to > black and white binary image by CTAn software. Then I open this dataset by > Fiji and then, I use skeletonized plugin to find center axis. Then, I check > the center axis by 3D viewer plugin. FInally, I use 3D objective counter > plugin to calculate the value for Z axis, the vertical axis. For example, I > got value as X is 35.610, Y is 49.505 and Z is 122.015. I want to express > these value in micrometer. Could I change? How can I change? Please guide > me as necessary. > > Sincerely > KM > > On Mon, Sep 28, 2015 at 8:45 PM, Kyaw Moe <[hidden email]> wrote: > > > Thank Professor. I will try. > > > > > > Sincerely > > KM > > > > On Mon, Sep 28, 2015 at 4:26 PM, s c Narula <[hidden email]> wrote: > > > >> Try 3 D object counter Diameter J > >> > >> Prof S C Narula > >> > >> On Fri, Sep 25, 2015 at 6:08 PM, Kyaw Moe <[hidden email]> wrote: > >> > >> > [image: Boxbe] <https://www.boxbe.com/overview> This message is > >> eligible > >> > for Automatic Cleanup! ([hidden email]) Add cleanup rule > >> > < > >> > https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3D2NCxLA5bPgHNClKUvXEHRRtX6Pf9F%252FDYP6lo%252FlVCUjvDTANwibmZivWWbbmrruA53b2XoBFZxSyl%252BjTWJDsmPRUKrQJPrmlBN0YtxOXO65d3MnU7WZ%252Fy%252Bx9MTt7gsgJYYXvNz3JKhqg%253D%26key%3DbaB38LdLyU09KSiDA2ZVowjHAsuhqGakGKhf1bmqs2A%253D&tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > >> > > >> > | More info > >> > < > >> > http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > >> > > >> > > >> > Thank Professor. > >> > I will try. > >> > > >> > Sincerely > >> > KM > >> > > >> > On Fri, Sep 25, 2015 at 2:47 AM, s c Narula <[hidden email]> > wrote: > >> > > >> > > try thershold and then analyze > >> > > > >> > > > >> > > Professor Narula > >> > > > >> > > On Thu, Sep 24, 2015 at 2:09 PM, Kyaw Moe <[hidden email]> > >> wrote: > >> > > > >> > > > [image: Boxbe] <https://www.boxbe.com/overview> This message is > >> > eligible > >> > > > for Automatic Cleanup! ([hidden email]) Add cleanup rule > >> > > > < > >> > > > >> > > >> > https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3DXUn1LXOLGHTafPVAumBxWMNvebtFTJRqx0Q%252BIvY7GORP066J3orEktUgvS0l%252FxiwjQ1GC57kiwoDnJXDpcmWUh9pWCJWUPHwhJihTdPRs1YYbgsRco%252FLwxXU4AP54OOFlzc3rWpvKJ8%253D%26key%3DqzI6EPhJC7Cao1kmwFT3c%252Ff5z1aNAOnmPoz63IvzlZA%253D&tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > >> > > > > >> > > > | More info > >> > > > < > >> > > > >> > > >> > http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > >> > > > > >> > > > > >> > > > Dear all > >> > > > I want to find the center of gravity of an irregular > >> > tube. > >> > > I > >> > > > used the plugin Skeletonize3D and AnalyseSkeleton, but I cannot > find > >> > the > >> > > > value in millimeter or micrometer for Center of Gravity of that > >> tube. > >> > > Could > >> > > > you help me, please? > >> > > > > >> > > > Best Regards > >> > > > Kyaw Moe > >> > > > > >> > > > -- > >> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > > > >> > > > > >> > > > >> > > -- > >> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > > >> > > >> > -- > >> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > >> > > >> > >> -- > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Dear Professor
I want to segment the image stack of root canal by fixed threshold. But I couldn't find fixed threshold function in "threshold tab" in "image" menu. Please help me. Sincerely KM On Tue, Oct 6, 2015 at 7:38 PM, s c Narula <[hidden email]> wrote: > First open analyze then do set scale in image j this might help you > > Prof S C Narula > > On Tue, Oct 6, 2015 at 12:26 PM, Kyaw Moe <[hidden email]> wrote: > > > [image: Boxbe] <https://www.boxbe.com/overview> This message is eligible > > for Automatic Cleanup! ([hidden email]) Add cleanup rule > > < > https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3DhyQLYsJS5oygfi%252B7bWWOlQA7RyUwctue8RXFtJp4TuZCbFbgGbLQwim2KU1c4fai%252FCobIyY2wSkp7dh1iAqUZAxxC2WLm8B67qZl1oAkREosuHT0OWugGXn2MgbmSRxp2oL48GYUy9I%253D%26key%3DfQfE6LIEPPi3D%252FXWCLagUEaePBpNQ4PuX56D0PGzsXw%253D&tc_serial=22872797984&tc_rand=638168180&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > > > | More info > > < > http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22872797984&tc_rand=638168180&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > > > > > Dear Professor > > I can apply 3D object counter. First I change my image to > > black and white binary image by CTAn software. Then I open this dataset > by > > Fiji and then, I use skeletonized plugin to find center axis. Then, I > check > > the center axis by 3D viewer plugin. FInally, I use 3D objective counter > > plugin to calculate the value for Z axis, the vertical axis. For > example, I > > got value as X is 35.610, Y is 49.505 and Z is 122.015. I want to express > > these value in micrometer. Could I change? How can I change? Please guide > > me as necessary. > > > > Sincerely > > KM > > > > On Mon, Sep 28, 2015 at 8:45 PM, Kyaw Moe <[hidden email]> wrote: > > > > > Thank Professor. I will try. > > > > > > > > > Sincerely > > > KM > > > > > > On Mon, Sep 28, 2015 at 4:26 PM, s c Narula <[hidden email]> > wrote: > > > > > >> Try 3 D object counter Diameter J > > >> > > >> Prof S C Narula > > >> > > >> On Fri, Sep 25, 2015 at 6:08 PM, Kyaw Moe <[hidden email]> > wrote: > > >> > > >> > [image: Boxbe] <https://www.boxbe.com/overview> This message is > > >> eligible > > >> > for Automatic Cleanup! ([hidden email]) Add cleanup rule > > >> > < > > >> > > > https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3D2NCxLA5bPgHNClKUvXEHRRtX6Pf9F%252FDYP6lo%252FlVCUjvDTANwibmZivWWbbmrruA53b2XoBFZxSyl%252BjTWJDsmPRUKrQJPrmlBN0YtxOXO65d3MnU7WZ%252Fy%252Bx9MTt7gsgJYYXvNz3JKhqg%253D%26key%3DbaB38LdLyU09KSiDA2ZVowjHAsuhqGakGKhf1bmqs2A%253D&tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > >> > > > >> > | More info > > >> > < > > >> > > > http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22761807921&tc_rand=1253361990&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > >> > > > >> > > > >> > Thank Professor. > > >> > I will try. > > >> > > > >> > Sincerely > > >> > KM > > >> > > > >> > On Fri, Sep 25, 2015 at 2:47 AM, s c Narula <[hidden email]> > > wrote: > > >> > > > >> > > try thershold and then analyze > > >> > > > > >> > > > > >> > > Professor Narula > > >> > > > > >> > > On Thu, Sep 24, 2015 at 2:09 PM, Kyaw Moe <[hidden email]> > > >> wrote: > > >> > > > > >> > > > [image: Boxbe] <https://www.boxbe.com/overview> This message is > > >> > eligible > > >> > > > for Automatic Cleanup! ([hidden email]) Add cleanup rule > > >> > > > < > > >> > > > > >> > > > >> > > > https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Ftoken%3DXUn1LXOLGHTafPVAumBxWMNvebtFTJRqx0Q%252BIvY7GORP066J3orEktUgvS0l%252FxiwjQ1GC57kiwoDnJXDpcmWUh9pWCJWUPHwhJihTdPRs1YYbgsRco%252FLwxXU4AP54OOFlzc3rWpvKJ8%253D%26key%3DqzI6EPhJC7Cao1kmwFT3c%252Ff5z1aNAOnmPoz63IvzlZA%253D&tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > >> > > > > > >> > > > | More info > > >> > > > < > > >> > > > > >> > > > >> > > > http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=22747326400&tc_rand=136602945&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001 > > >> > > > > > >> > > > > > >> > > > Dear all > > >> > > > I want to find the center of gravity of an > irregular > > >> > tube. > > >> > > I > > >> > > > used the plugin Skeletonize3D and AnalyseSkeleton, but I cannot > > find > > >> > the > > >> > > > value in millimeter or micrometer for Center of Gravity of that > > >> tube. > > >> > > Could > > >> > > > you help me, please? > > >> > > > > > >> > > > Best Regards > > >> > > > Kyaw Moe > > >> > > > > > >> > > > -- > > >> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > >> > > > > > >> > > > > > >> > > > > >> > > -- > > >> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > >> > > > > >> > > > >> > -- > > >> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > >> > > > >> > > > >> > > >> -- > > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > >> > > > > > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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