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HI all, I created a macro to analyse 5 stack images and want to run it with a series of pictures. It looks like this:
run("Images to Stack", "name=Stack title=[] use");
run("Z Project...", "projection=[Max Intensity]");
setAutoThreshold("IJ_IsoData");
//run("Threshold...");
setAutoThreshold("IJ_IsoData");
run("Convert to Mask");
run("Close");
run("Make Binary");
run("Dilate");
run("Fill Holes");
run("Erode");
run("Analyze Particles...", "size=50-Infinity pixel circularity=0.50-1.00 show=Outlines display include summarize add in_situ");
Every time I run it on my images it keeps asking for different parameters I though I specified in the macro:
for ex
Convert stack to binary (method and background)
or
process stack?
or the threshold type,, etc.
Other macros I run dont stop in every step though they look quite similar, run on the same open ImageJ software.
Anybody can tell me how to make the macro to run "non stop"?
THANKS a lot
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