Hello,
I have noticed an odd behavior in the Image>Stacks>Tools>CombineŠ command. Say that I have several 100x100 ROIs in a large 16 bit 3-channel image that I want to stitch into a mosaic while discarding the rest of the image. I create a 100x100 rectangle, duplicate out a few ROIs and use the crop command to make the last 100x100 ROI. As far as I can tell the duplicated ROIs and the cropped ROI are identical. Two duplicated ROIs will combine with no problem but when I try to combine a duplicated ROI with a cropped ROI it tells me that they are not the same data type. I am using the latest Fiji update in OSX 10.10.5. Can anyone replicate this? Thanks, Tim Timothy Feinstein, Ph.D. Research Scientist University of Pittsburgh Department of Developmental Biology -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Updating my last message, it appears that none of the 100x100 images
created by the Duplicate command (cmd+shift+D, all 3 channels) are compatible with each other. Every pairwise combination leads to an error message that they are not the same data type. I cannot see anything about the images themselves that would make the computer think this. Tim Timothy Feinstein, Ph.D. Research Scientist University of Pittsburgh Department of Developmental Biology On 11/30/16, 1:24 PM, "Feinstein, Timothy N" <[hidden email]> wrote: >Hello, > >I have noticed an odd behavior in the Image>Stacks>Tools>CombineŠ command. > Say that I have several 100x100 ROIs in a large 16 bit 3-channel image >that I want to stitch into a mosaic while discarding the rest of the >image. I create a 100x100 rectangle, duplicate out a few ROIs and use the >crop command to make the last 100x100 ROI. As far as I can tell the >duplicated ROIs and the cropped ROI are identical. Two duplicated ROIs >will combine with no problem but when I try to combine a duplicated ROI >with a cropped ROI it tells me that they are not the same data type. I am >using the latest Fiji update in OSX 10.10.5. Can anyone replicate this? > >Thanks, > > >Tim > >Timothy Feinstein, Ph.D. >Research Scientist >University of Pittsburgh Department of Developmental Biology > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Hi Tim,
sorry, I can't reproduce this. Try this macro: run("HeLa Cells (1.3M, 48-bit RGB)"); makeRectangle(59, 66, 114, 114); run("Duplicate...", "title=dup-1 duplicate"); selectWindow("hela-cells.tif"); makeRectangle(275, 82, 114, 114); run("Duplicate...", "title=dup-2 duplicate"); selectWindow("hela-cells.tif"); makeRectangle(367, 329, 114, 114); run("Crop"); run("Combine...", "stack1=hela-cells.tif stack2=dup-1"); run("Combine...", "stack1=[Combined Stacks] stack2=dup-2"); run("Select All"); I also tried all three possibilities which 'axis' to define for the three stack slices in Image>Properties<: c, z, t; it works for all. I am using a recent daily build (plain ImageJ, not Fiji): ImageJ 1.51i7; Java 1.6.0_65 [64-bit] Michael ________________________________________________________________ On 2016-11-30 19:35, Feinstein, Timothy N wrote: > Updating my last message, it appears that none of the 100x100 images > created by the Duplicate command (cmd+shift+D, all 3 channels) are > compatible with each other. Every pairwise combination leads to an error > message that they are not the same data type. I cannot see anything about > the images themselves that would make the computer think this. > > > Tim > > Timothy Feinstein, Ph.D. > Research Scientist > University of Pittsburgh Department of Developmental Biology > > > > > > On 11/30/16, 1:24 PM, "Feinstein, Timothy N" <[hidden email]> wrote: > >> Hello, >> >> I have noticed an odd behavior in the Image>Stacks>Tools>CombineŠ command. >> Say that I have several 100x100 ROIs in a large 16 bit 3-channel image >> that I want to stitch into a mosaic while discarding the rest of the >> image. I create a 100x100 rectangle, duplicate out a few ROIs and use the >> crop command to make the last 100x100 ROI. As far as I can tell the >> duplicated ROIs and the cropped ROI are identical. Two duplicated ROIs >> will combine with no problem but when I try to combine a duplicated ROI >> with a cropped ROI it tells me that they are not the same data type. I am >> using the latest Fiji update in OSX 10.10.5. Can anyone replicate this? >> >> Thanks, >> >> >> Tim >> >> Timothy Feinstein, Ph.D. >> Research Scientist >> University of Pittsburgh Department of Developmental Biology >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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