Re: How to label all objects in a binary image?

Posted by David Webster on Nov 20, 2011; 7:14pm
URL: http://imagej.273.s1.nabble.com/How-to-label-all-objects-in-a-binary-image-tp3682523p3682525.html

To clarify, set the "Show" option from the "Analyze Particles" window to
"Count Masks".
Also works in vanilla ImageJ, you don't need to download Fiji if you
haven't done so already.

David Webster

On Sun, Nov 20, 2011 at 4:17 AM, Karsten <[hidden email]> wrote:

> Hi
>
> to stay with your habits, have a look into the morphology plugins of
> Gabriel Landini. There is a binary label and binarylabel8
>
> Regards
> Karsten
>
> Am 20.11.2011 um 11:04 schrieb daniel white:
>
> > Hi Mohanned
> >
> > try the
> > Analyze Particles
> > tool, built into imageJ/Fiji
> >
> > but first go to
> > Set Measurements
> > and tun on the stuff you want to measure
> >
> > lastly, dont forget to read the imageJ user guide
> > http://rsbweb.nih.gov/ij/docs/guide/index.html
> > (its very good!)
> > before asking trivial questions!
> > many answers are right there!
> >
> > cheers
> >
> >
> > D
> >
> > On Nov 20, 2011, at 6:00 AM, IMAGEJ automatic digest system wrote:
> >
> >> Date:    Sat, 19 Nov 2011 12:07:20 +0200
> >> From:    Mohammed Tlais <[hidden email]>
> >> Subject: How to label all objects in a binary image?
> >>
> >> Dear All,
> >>
> >> I have a binary images of cells, and I want to detect these cells to do
> my
> >> measurements (area, perimeter, etc...). Is there any tool for that?
> >>
> >> I used to work on a software that has a simple label function to process
> >> the binary image and copy the label into a labelled image.
> >>
> >> Best Regards,
> >> Moe Tleis
> >
> > Dr. Daniel James White BSc. (Hons.) PhD
> >
> > Leader - Image Processing Facility,
> > Senior Microscopist,
> > Light Microscopy Facility.
> >
> > Max Planck Institute of Molecular Cell Biology and Genetics
> > Pfotenhauerstrasse 108
> > 01307 DRESDEN
> > Germany
> >
> > [phone] (German Mobile)
> > [phone] (Work phone at MPI-CBG)
> > [phone] (Fax MPI-CBG LMF)
> > chalkie666                                    Skype
> > http://www.bioimagexd.net     BioImageXD
> > http://fiji.sc                                        Fiji -  is just
> ImageJ (Batteries Included)
> > http://www.chalkie.org.uk             Dan's Homepages
> > https://ifn.mpi-cbg.de                        Biopolis Dresden Imaging
> Platform (BioDIP)
> > dan (at) chalkie.org.uk
> > ( white (at) mpi-cbg.de )
>
> Karsten
> [hidden email]
>