Login  Register

list of x, y, and z coordinates included in a list of ROI in ROI Manager

Posted by Ioannis Sechopoulos on Sep 13, 2011; 9:29pm
URL: http://imagej.273.s1.nabble.com/list-of-x-y-and-z-coordinates-included-in-a-list-of-ROI-in-ROI-Manager-tp3683163.html

I hope somebody can help me.
I need to obtain a list of the x, y, and z (slice number) coordinates of
the pixels included in ROIs listed in the ROI Manager. The ROIs are a
combination of freehand and freehand+brush selections.
Specifically, I would create a ROI in a slice of a stack, add it to ROI
Manager, then move to the next slice, modify the ROI with the brush, add
it to the ROI Manager, etc. When done, I need to be able to output the
list of coordinates for all the ROIs. Any Macro or set of commands to be
able to do this?

Thanks in advance!