Re: any image database that can be integrated in ImageJ?

Posted by Kevin W Eliceiri on Sep 12, 2011; 3:29pm
URL: http://imagej.273.s1.nabble.com/any-image-database-that-can-be-integrated-in-ImageJ-tp3683165p3683168.html

There is currently a plugin for downloading images from the OME database into ImageJ. However we in the OME consortium are working to improve this plugin, including adding functionality for upload and download and taking advantage of the FIJI  (http://fiji.sc/) and ImageJ2 efforts (www.imagejdev.org). 

Please contact us if any questions.


best
kevin

On 09/12/11, John Oreopoulos   wrote:

> It's not integrated with ImageJ, but you should take a look at the Open Microscopy Environment (OME).
>
> http://www.openmicroscopy.org/site
>
> John Oreopoulos
> Research Assistant
> Spectral Applied Research
> Richmond Hill, Ontario
> Canada
> www.spectral.ca
>
>
>
> Quoting Michael Schmid <[hidden email]>:
>
> >Hi everyone,
> >
> >before I start reinventing the wheel:
> >
> >Is anyone of you aware of an image database that can be integrated in ImageJ?
> >
> >Features that I would like:
> >
> >- Adding keywords, free text (annotations), quality rating to images
> >(and possibly more)
> >- Offline use, with possibility for syncing with central server (the
> >easiest would be WebDAV via the file system; setting up MySQL without
> >security problems seems more difficult). Syncing with several users
> >working on one database would probably be easiest with timestamps, the
> >last edit of each item replacing old edits.
> >- Image name (best without extension, with or without directory with
> >respect to some base path) as image identification
> >- Separate databases for different directories/sets of directories
> >- Should work on Windows and Mac OS X
> >- Of course open source, so I can modify it according to my needs.
> >
> >
> >Michael

--
Kevin W. Eliceiri
Director and Principal Investigator
Laboratory for Optical and Computational Instrumentation (LOCI)
http://www.loci.wisc.edu
Departments of Molecular Biology and Biomedical Engineering
Affiliate Investigator, Morgridge Institute for Research (MIR)
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