Posted by
Cammer, Michael on
Aug 01, 2011; 5:01pm
URL: http://imagej.273.s1.nabble.com/error-adding-slice-after-splitting-channels-tp3683661.html
We are getting an error when we try to add a slice to a stack.
We drag and drop a 2 channel Z series Zeiss 710 generated image onto ImageJ. It opens fine with two color channels and 34 Z slices.
We split the channels. When we try to add a slice, the following exception is thrown:
java.lang.ArrayIndexOutOfBoundsException: 34
at ij.ImageStack.addSlice(ImageStack.java:69)
at ij.ImageStack.addSlice(ImageStack.java:100)
at ij.ImageStack.addSlice(ImageStack.java:108)
at ij.plugin.StackEditor.addSlice(StackEditor.java:52)
at ij.plugin.StackEditor.run(StackEditor.java:24)
at ij.IJ.runPlugIn(IJ.java:156)
at ij.Executer.runCommand(Executer.java:127)
at ij.Executer.run(Executer.java:61)
at ij.IJ.run(IJ.java:249)
at ij.IJ.run(IJ.java:227)
at ij.macro.Functions.doRun(Functions.java:569)
at ij.macro.Functions.doFunction(Functions.java:80)
at ij.macro.Interpreter.doStatement(Interpreter.java:203)
at ij.macro.Interpreter.doIf(Interpreter.java:852)
at ij.macro.Interpreter.doStatement(Interpreter.java:215)
at ij.macro.Interpreter.doIf(Interpreter.java:865)
at ij.macro.Interpreter.doStatement(Interpreter.java:215)
at ij.macro.Interpreter.doBlock(Interpreter.java:518)
at ij.macro.Interpreter.runMacro(Interpreter.java:130)
at ij.macro.MacroRunner.run(MacroRunner.java:139)
at java.lang.Thread.run(Unknown Source)
To try to solve this, we updated from an ImageJ version a few weeks old to the most recent daily build. But the problem persists. We can get around the problem by saving each channel's stack after the split, closing, and opening.
Saving as TIF before splitting, however, causes the same error.
Thank you.
________________________________________________________
Michael Cammer, Assistant Research Scientist
Skirball Institute of Biomolecular Medicine
Lab: (212) 263-3208 Cell: (914) 309-3270
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