Re: jp2 files, LOCI bioformats, Neurolucida virtual slice

Posted by Melissa Linkert-2 on Jun 28, 2011; 10:41pm
URL: http://imagej.273.s1.nabble.com/jp2-files-LOCI-bioformats-Neurolucida-virtual-slice-tp3684085p3684090.html

Hi Dave,

> We are curious if it is possible to open .jp2 files generated by Neurolucida v10 and their Virtual slice module? We have tried and currently the 2D RGB compressed file is opened using the LOCI tools but not correct (out of XY sequence and monochrome).  We also cannot open the 3D z-stack RGB images. Any advice or help would be appreciated!

(Note for everyone else: this problem report and several files were also
sent separately to the Bio-Formats developers.)

The 2D files at least should open correctly if you update to the very
latest trunk build of Bio-Formats.  I am not sure about the 3D files though;
hopefully upgrading solves the problem for those as well, but if not it
would be very helpful if you could send an example 3D file as instructed
previously off-list.

Regards,
-Melissa

On Tue, Jun 28, 2011 at 11:33:23AM -0500, Kline, David D. wrote:
> Greetings Image J users,
>
> We are curious if it is possible to open .jp2 files generated by Neurolucida v10 and their Virtual slice module? We have tried and currently the 2D RGB compressed file is opened using the LOCI tools but not correct (out of XY sequence and monochrome).  We also cannot open the 3D z-stack RGB images. Any advice or help would be appreciated!
>
> Many thanks!
>
> Dave