Re: Modify Sholl Analysis to measure an arc

Posted by Nathaniel Ryckman on May 31, 2011; 4:11pm
URL: http://imagej.273.s1.nabble.com/Modify-Sholl-Analysis-to-measure-an-arc-tp3684420p3684421.html

J. Stanko wrote

Does anyone know how to modify the Sholl Analysis plugin so it measures intersections in an arc (as in the image) instead of the full circumference?

I apologize for multiple postings, I was having issues registering.

Thanks!

Here is the source code:
http://www.biology.ucsd.edu/labs/ghosh/software/ShollAnalysis_.java

You can follow the logic and see what you need to change ;-).

If I were taking on such a project, I probably would start messing with this function first:
static public int[][] getCircumferencePoints(int cx, int cy, int r, int width)
{
}

Good luck!