Posted by
Mark Adelman (Work) on
Apr 04, 2011; 2:47pm
URL: http://imagej.273.s1.nabble.com/JAVA-error-messages-tp3684729.html
Can someone give me some guidance regarding JAVA error messages I am
getting? An example is included at the end of this message. Am
learning to do some wide-field image deconvolution work. My platform
is a MacBook (2.13 GHz Intel Core 2 Duo, 4 GB MHz DDR2 SDRAM, OS
10.5.8). It is up-to-date on all Mac software updates (including the
JAVA that Mac provides). I am running ImageJ 1.45d (under Micro-
Manager 1.3). My knowledge of JAVA, programming, etc. is quite
limited. Have been using an old confocal microscopy (MRC600) data set
as a test sample. Have gotten some pretty nice results using the
plugins by Bob Dougherty (in the Deconvolution folder) to generate a
PSF and to do Iterative 3D deconvolutions, first of the confocal set
and then of some actual wide field data sets. I was also able to run
a number of the plugins in the DeconvolutionLab folder. When I tried
Parallel Iterative Deconvolutions a number of one line JAVA error
messages (about thrown threads, exceptions, etc....) showed up. I
moved on to Parallel Spectral Deconvolutions and, no matter what I
tried, got long error messages (see example below) and the program
locked. Can someone suggest how to figure out what I'm doing wrong?
Have looked at the Wiki page and done a number of Google searches, to
no avail. Am just starting to read on JAVA and other programming
issues, but am a LONG way from being able to resolve this without some
guidance from people more knowledgeable than me. Thanks in advance
for any help!
Mark Adelman
>
> java.lang.NoSuchMethodError:
> cern.colt.matrix.tfloat.FloatMatrix3D.size()J
> at
> edu
> .emory
> .mathcs
> .restoretools.spectral.FloatCommon3D.assignPixelsToMatrix(Unknown
> Source)
> at
> edu
> .emory
> .mathcs
> .restoretools
> .spectral.AbstractFloatSpectralDeconvolver3D.<init>(Unknown Source)
> at
> edu
> .emory
> .mathcs
> .restoretools.spectral.tik.FloatReflexiveTikhonov3D.<init>(Unknown
> Source)
> at
> edu
> .emory.mathcs.restoretools.spectral.ParallelSpectralDeconvolution3D
> $MainPanel$DeconvolveButtonActionListener$1.run(Unknown Source)
> at java.lang.Thread.run(Thread.java:655)
>